mRNA_M-pyrifera_M_contig77623.18265.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77623.18265.1
Unique NamemRNA_M-pyrifera_M_contig77623.18265.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77623.18265.1 vs. uniprot
Match: A0A813BI58_9DINO (Chmp2b protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BI58_9DINO)

HSP 1 Score: 68.6 bits (166), Expect = 2.590e-11
Identity = 45/128 (35.16%), Postives = 75/128 (58.59%), Query Frame = 1 
Query:    1 RAAKREMRGGRREVEXXXXXXXXXXXRILGQLRVEAKKGGKENPMVRSLAKQLTQVRAGKARLAGTLGTLRGVETQVTVAAATATTGAALGSAAGVLKRGNDAMLKSGALTGVRDFAAAAARMDMSED 384
            R  KRE+  G+R+VE           ++  +++  A++G ++  +V++LAKQL Q+R  +A+L G    +  ++ Q+T  AATA+ G A+  A GVLK+ N  M +   +   RDFA A  RMDM+++
Sbjct:    3 REGKREIERGKRDVERQRLVNKREQEKVTAEIKRAARQGNQD--VVKTLAKQLVQLRNHEAKLMGFTANMSSMQMQMTSMAATASMGTAMAKATGVLKQQNAQMQQQNMMHVARDFAMATERMDMTQE 128
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77623.18265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A813BI58_9DINO2.590e-1135.16Chmp2b protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77623contigM-pyrifera_M_contig77623:38..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue5.4e-07
Seed eggNOG ortholog2880.D8LJ70
Preferred nameCHMP2B
KEGG koko:K12192
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000815,GO:0000819,GO:0000920,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0006810,GO:0006914,GO:0006996,GO:0006997,GO:0007032,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019725,GO:0019904,GO:0022402,GO:0022411,GO:0022607,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032509,GO:0032510,GO:0032886,GO:0032984,GO:0032991,GO:0033043,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040017,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044248,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046605,GO:0046755,GO:0046907,GO:0048284,GO:0048285,GO:0048518,GO:0048524,GO:0050000,GO:0050789,GO:0050792,GO:0050794,GO:0050877,GO:0050890,GO:0051128,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060249,GO:0061024,GO:0061025,GO:0061763,GO:0061919,GO:0065007,GO:0065008,GO:0070050,GO:0070507,GO:0070925,GO:0071840,GO:0071985,GO:0090169,GO:0090174,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:1901673,GO:1902115,GO:1902186,GO:1902188,GO:1903047,GO:1903900,GO:1903902,GO:1904896,GO:1904903
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3231@2759
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Exons1
Model size543
Cds size525
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.143135-UTR-M-pyrifera_M_contig77623:37..551622816677.143135-UTR-M-pyrifera_M_contig77623:37..55Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77623 38..55 +
1692278113.8156853-UTR-M-pyrifera_M_contig77623:37..551692278113.8156853-UTR-M-pyrifera_M_contig77623:37..55Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77623 38..55 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.1545603-CDS-M-pyrifera_M_contig77623:55..5801622816677.1545603-CDS-M-pyrifera_M_contig77623:55..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77623 56..580 +
1692278113.828857-CDS-M-pyrifera_M_contig77623:55..5801692278113.828857-CDS-M-pyrifera_M_contig77623:55..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77623 56..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77623.18265.1prot_M-pyrifera_M_contig77623.18265.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77623 56..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77623.18265.1

>prot_M-pyrifera_M_contig77623.18265.1 ID=prot_M-pyrifera_M_contig77623.18265.1|Name=mRNA_M-pyrifera_M_contig77623.18265.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
MRGGRREVERELRGLEREERRILGQLRVEAKKGGKENPMVRSLAKQLTQV
RAGKARLAGTLGTLRGVETQVTVAAATATTGAALGSAAGVLKRGNDAMLK
SGALTGVRDFAAAAARMDMSEDMMDDMLGSLDDADLDDEADDVVASVAAE
IGLEMAADLPSAPHTTHPTPTTTTA
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mRNA from alignment at M-pyrifera_M_contig77623:38..580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77623.18265.1 ID=mRNA_M-pyrifera_M_contig77623.18265.1|Name=mRNA_M-pyrifera_M_contig77623.18265.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=543bp|location=Sequence derived from alignment at M-pyrifera_M_contig77623:38..580+ (Macrocystis pyrifera P11B4 male)
CGAGCAGCGAAGCGGGAGATGCGTGGTGGTCGTCGCGAGGTGGAGCGTGA
GCTTCGTGGTCTGGAGCGTGAGGAGCGTCGGATTTTGGGTCAGTTGCGGG
TGGAGGCGAAGAAGGGCGGGAAGGAGAACCCGATGGTGCGGAGTTTGGCC
AAGCAGCTGACGCAGGTGCGGGCTGGGAAGGCGCGGCTGGCGGGTACTCT
GGGTACGTTGCGGGGCGTGGAGACGCAGGTGACCGTTGCGGCAGCCACTG
CGACCACTGGCGCGGCTTTGGGCTCTGCTGCCGGGGTGCTCAAGCGCGGA
AACGACGCCATGCTCAAATCAGGCGCTCTCACAGGTGTTCGGGACTTTGC
AGCCGCTGCAGCGCGCATGGACATGTCAGAGGACATGATGGACGACATGC
TGGGTTCTCTCGATGACGCAGACCTCGACGACGAAGCAGACGACGTCGTC
GCGAGCGTCGCTGCGGAAATCGGACTCGAAATGGCTGCAGACCTCCCCTC
CGCCCCACACACAACACACCCGACCCCAACCACCACCACTGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77623:38..580+

>mRNA_M-pyrifera_M_contig77623.18265.1 ID=mRNA_M-pyrifera_M_contig77623.18265.1|Name=mRNA_M-pyrifera_M_contig77623.18265.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig77623:38..580+ (Macrocystis pyrifera P11B4 male)
ATGCGTGGTGGTCGTCGCGAGGTGGAGCGTGAGCTTCGTGGTCTGGAGCG
TGAGGAGCGTCGGATTTTGGGTCAGTTGCGGGTGGAGGCGAAGAAGGGCG
GGAAGGAGAACCCGATGGTGCGGAGTTTGGCCAAGCAGCTGACGCAGGTG
CGGGCTGGGAAGGCGCGGCTGGCGGGTACTCTGGGTACGTTGCGGGGCGT
GGAGACGCAGGTGACCGTTGCGGCAGCCACTGCGACCACTGGCGCGGCTT
TGGGCTCTGCTGCCGGGGTGCTCAAGCGCGGAAACGACGCCATGCTCAAA
TCAGGCGCTCTCACAGGTGTTCGGGACTTTGCAGCCGCTGCAGCGCGCAT
GGACATGTCAGAGGACATGATGGACGACATGCTGGGTTCTCTCGATGACG
CAGACCTCGACGACGAAGCAGACGACGTCGTCGCGAGCGTCGCTGCGGAA
ATCGGACTCGAAATGGCTGCAGACCTCCCCTCCGCCCCACACACAACACA
CCCGACCCCAACCACCACCACTGCAATGCGTGGTGGTCGTCGCGAGGTGG
AGCGTGAGCTTCGTGGTCTGGAGCGTGAGGAGCGTCGGATTTTGGGTCAG
TTGCGGGTGGAGGCGAAGAAGGGCGGGAAGGAGAACCCGATGGTGCGGAG
TTTGGCCAAGCAGCTGACGCAGGTGCGGGCTGGGAAGGCGCGGCTGGCGG
GTACTCTGGGTACGTTGCGGGGCGTGGAGACGCAGGTGACCGTTGCGGCA
GCCACTGCGACCACTGGCGCGGCTTTGGGCTCTGCTGCCGGGGTGCTCAA
GCGCGGAAACGACGCCATGCTCAAATCAGGCGCTCTCACAGGTGTTCGGG
ACTTTGCAGCCGCTGCAGCGCGCATGGACATGTCAGAGGACATGATGGAC
GACATGCTGGGTTCTCTCGATGACGCAGACCTCGACGACGAAGCAGACGA
CGTCGTCGCGAGCGTCGCTGCGGAAATCGGACTCGAAATGGCTGCAGACC
TCCCCTCCGCCCCACACACAACACACCCGACCCCAACCACCACCACTGCA
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