prot_M-pyrifera_M_contig7699.18149.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig7699.18149.1
Unique Nameprot_M-pyrifera_M_contig7699.18149.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length145
Homology
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BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: D7FMT6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT6_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 4.030e-53
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0 
Query:    1 GLRGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRLTEDAKCKERR 96
            GLRGGPDRYSQKKGPRRTDYRVNL+GLP GTSWQD+KSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVI KLD+TKF+G+YIRL ED KCK RR
Sbjct:  125 GLRGGPDRYSQKKGPRRTDYRVNLSGLPSGTSWQDIKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARR 220
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BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: K3WQ99_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ99_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 5.130e-16
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 0 
Query:    5 GPDRYSQ--KKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRLT---EDAKCKERRPKEEKS 102
            G DR+ +  +  P RT++RV ++ LP GT W+++K   R   E  Y  I + G  L EF S D+ME+ I KLDDT+F G+Y+R+T    D + + R P  ++S
Sbjct:   39 GGDRFERNARTPPTRTEFRVRVSDLPRGTDWRNVKDFLRSGGEVTYCNIESDGTALAEFQSKDDMENAIKKLDDTEFRGNYVRITAEGSDRRSRSRSPPRDRS 141
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BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A2H1BVR1_FASHE (Serine/arginine-rich splicing factor 1 n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1BVR1_FASHE)

HSP 1 Score: 80.9 bits (198), Expect = 6.200e-16
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 0 
Query:    3 RGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNG-----DYIRLTED 89
            RGG  R S    PRR+D+RV +TGLPP  SWQDLK   R+  + GY  ++  G G+VEF   ++M++ I +LDD+KF        YIR+ E+
Sbjct:  100 RGGMGRNSTGGPPRRSDFRVIVTGLPPTGSWQDLKDHMREAGDVGYTDVFRDGTGVVEFLRYEDMKYAIRRLDDSKFRSHEGESSYIRVREE 191
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BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.110e-15
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 0 
Query:    5 GPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRL 86
            G DR + +  P+RTD+RV +T LP GT W+++K   R   E  Y  I   G  + EF S ++M++ I KLDDT+F G+Y+RL
Sbjct:  104 GFDRGAGRNPPQRTDFRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRL 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A183B9U7_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183B9U7_9TREM)

HSP 1 Score: 77.8 bits (190), Expect = 7.300e-15
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0 
Query:    3 RGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKF 79
            RGG  R S    PRR+D+RV +TGLPP  SWQDLK   R+  + GY  ++  G G+VEF   ++M++ I +LDD+KF
Sbjct:   99 RGGFGRGSAGGPPRRSDFRVIVTGLPPTGSWQDLKDHMREAGDVGYTDVFRDGTGVVEFLRYEDMKYAIRRLDDSKF 175
[Close]
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0P1ACL5_PLAHL (Serine arginine-rich splicing factor 1-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACL5_PLAHL)

HSP 1 Score: 78.2 bits (191), Expect = 2.520e-14
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 0 
Query:    1 GLRGGPDRYSQ---------KKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRL 86
            G RG  DR+S+         +  P+RTDYRV +T LP    W+++K   R   E  Y  I T G  + EF + D+ME  I KLDDT+F G Y+R+
Sbjct:  185 GRRGDDDRFSRXXXXXXXXGRNPPQRTDYRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIETDGSAIAEFQTKDDMEDAIKKLDDTEFRGSYVRV 279
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BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: J9DZB2_WUCBA (Alternative splicing regulator (Fragment) n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=J9DZB2_WUCBA)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:    5 GPDRYSQKKGP--RRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGD-----YIRLTE 88
            GPD  S ++GP  RR+ YRV ++GLP   SWQDLK   R   E  Y  ++  G G+VE+ + ++M++ + KLDDTKF        YIR+ E
Sbjct:   47 GPDPRSPRRGPPPRRSGYRVIVSGLPDTGSWQDLKDHMRDAGEICYADVFRDGTGVVEYTNYEDMKYALRKLDDTKFKSHEGEVTYIRVKE 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0J9Y154_BRUMA (Bm7293, isoform a n=13 Tax=Onchocercidae TaxID=6296 RepID=A0A0J9Y154_BRUMA)

HSP 1 Score: 75.1 bits (183), Expect = 1.990e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:    5 GPDRYSQKKGP--RRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGD-----YIRLTE 88
            GPD  S ++GP  RR+ YRV ++GLP   SWQDLK   R   E  Y  ++  G G+VE+ + ++M++ + KLDDTKF        YIR+ E
Sbjct:  107 GPDSRSPRRGPPPRRSGYRVIVSGLPDTGSWQDLKDHMRDAGEICYADVFRDGTGVVEYTNYEDMKYALRKLDDTKFKSHEGEVTYIRVKE 197
[Close]
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0D2MLY2_9CHLO (Splicing factor, arginine/serine-rich 1/9 (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MLY2_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 2.920e-13
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 0 
Query:   17 RTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYT-KGE--GLVEFNSLDEMEHVINKLDDTKFNGDY----IRLTED 89
            R+ YRV + GLPP  SWQDLK  FR   +P +V +   +GE  G+ +F + DEM+HVI KLDDT+F   +    IR+TED
Sbjct:  105 RSGYRVTVRGLPPSASWQDLKDHFRMVTKPIFVDVIRDRGETIGVADFETRDEMDHVIRKLDDTEFKNPFEQCFIRITED 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0M3IRK5_ASCLU (RRM domain-containing protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3IRK5_ASCLU)

HSP 1 Score: 73.2 bits (178), Expect = 3.130e-13
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 0 
Query:   15 PRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFN---GD--YIRLTE 88
            PRR+ YRV ++GLP   SWQDLK   R   +  Y  +Y  G G+VE+   D+M++ I KLDDTKF    GD  YIR+ E
Sbjct:   63 PRRSGYRVIVSGLPSSGSWQDLKDHMRDAGDICYADVYRDGTGVVEYTKYDDMKYAIRKLDDTKFKSHEGDTSYIRVRE 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMT6_ECTSI4.030e-5389.58RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
K3WQ99_GLOUD5.130e-1639.81RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A2H1BVR1_FASHE6.200e-1644.57Serine/arginine-rich splicing factor 1 n=1 Tax=Fas... [more]
A0A5D6YQ52_9STRA3.110e-1543.90Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A183B9U7_9TREM7.300e-1548.05Uncharacterized protein n=1 Tax=Echinostoma capron... [more]
A0A0P1ACL5_PLAHL2.520e-1441.05Serine arginine-rich splicing factor 1-like n=1 Ta... [more]
J9DZB2_WUCBA1.200e-1342.86Alternative splicing regulator (Fragment) n=1 Tax=... [more]
A0A0J9Y154_BRUMA1.990e-1342.86Bm7293, isoform a n=13 Tax=Onchocercidae TaxID=629... [more]
A0A0D2MLY2_9CHLO2.920e-1348.75Splicing factor, arginine/serine-rich 1/9 (Fragmen... [more]
A0A0M3IRK5_ASCLU3.130e-1348.10RRM domain-containing protein n=1 Tax=Ascaris lumb... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 21..87
e-value: 7.6E-10
score: 48.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 25..84
e-value: 1.5E-11
score: 43.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 20..91
score: 11.486
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 19..90
e-value: 5.1E-17
score: 63.6
NoneNo IPR availablePANTHERPTHR23003:SF30SERINE/ARGININE-RICH-SPLICING FACTOR 5A-RELATEDcoord: 5..142
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 5..142
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 14..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7699contigM-pyrifera_M_contig7699:529..4449 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7699.18149.1mRNA_M-pyrifera_M_contig7699.18149.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig7699 529..4450 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig7699.18149.1 ID=prot_M-pyrifera_M_contig7699.18149.1|Name=mRNA_M-pyrifera_M_contig7699.18149.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
GLRGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQ
IYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRLTEDAKCKERRPKEE
KSTKVTRSQSRSRSRSKSRSRGRRSPSRSRASNRKRARSPSRSRS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf