mRNA_M-pyrifera_M_contig7699.18149.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7699.18149.1
Unique NamemRNA_M-pyrifera_M_contig7699.18149.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: D7FMT6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT6_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 4.030e-53
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 1
Query:    1 GLRGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRLTEDAKCKERR 288
            GLRGGPDRYSQKKGPRRTDYRVNL+GLP GTSWQD+KSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVI KLD+TKF+G+YIRL ED KCK RR
Sbjct:  125 GLRGGPDRYSQKKGPRRTDYRVNLSGLPSGTSWQDIKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARR 220          
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: K3WQ99_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ99_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 5.130e-16
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   13 GPDRYSQ--KKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRLT---EDAKCKERRPKEEKS 306
            G DR+ +  +  P RT++RV ++ LP GT W+++K   R   E  Y  I + G  L EF S D+ME+ I KLDDT+F G+Y+R+T    D + + R P  ++S
Sbjct:   39 GGDRFERNARTPPTRTEFRVRVSDLPRGTDWRNVKDFLRSGGEVTYCNIESDGTALAEFQSKDDMENAIKKLDDTEFRGNYVRITAEGSDRRSRSRSPPRDRS 141          
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A2H1BVR1_FASHE (Serine/arginine-rich splicing factor 1 n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1BVR1_FASHE)

HSP 1 Score: 80.9 bits (198), Expect = 6.200e-16
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    7 RGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNG-----DYIRLTED 267
            RGG  R S    PRR+D+RV +TGLPP  SWQDLK   R+  + GY  ++  G G+VEF   ++M++ I +LDD+KF        YIR+ E+
Sbjct:  100 RGGMGRNSTGGPPRRSDFRVIVTGLPPTGSWQDLKDHMREAGDVGYTDVFRDGTGVVEFLRYEDMKYAIRRLDDSKFRSHEGESSYIRVREE 191          
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.110e-15
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   13 GPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRL 258
            G DR + +  P+RTD+RV +T LP GT W+++K   R   E  Y  I   G  + EF S ++M++ I KLDDT+F G+Y+RL
Sbjct:  104 GFDRGAGRNPPQRTDFRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRL 185          
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A183B9U7_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183B9U7_9TREM)

HSP 1 Score: 77.8 bits (190), Expect = 7.300e-15
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    7 RGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKF 237
            RGG  R S    PRR+D+RV +TGLPP  SWQDLK   R+  + GY  ++  G G+VEF   ++M++ I +LDD+KF
Sbjct:   99 RGGFGRGSAGGPPRRSDFRVIVTGLPPTGSWQDLKDHMREAGDVGYTDVFRDGTGVVEFLRYEDMKYAIRRLDDSKF 175          
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0P1ACL5_PLAHL (Serine arginine-rich splicing factor 1-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACL5_PLAHL)

HSP 1 Score: 78.2 bits (191), Expect = 2.520e-14
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 1
Query:    1 GLRGGPDRYSQ---------KKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRL 258
            G RG  DR+S+         +  P+RTDYRV +T LP    W+++K   R   E  Y  I T G  + EF + D+ME  I KLDDT+F G Y+R+
Sbjct:  185 GRRGDDDRFSRXXXXXXXXGRNPPQRTDYRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIETDGSAIAEFQTKDDMEDAIKKLDDTEFRGSYVRV 279          
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: J9DZB2_WUCBA (Alternative splicing regulator (Fragment) n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=J9DZB2_WUCBA)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   13 GPDRYSQKKGP--RRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGD-----YIRLTE 264
            GPD  S ++GP  RR+ YRV ++GLP   SWQDLK   R   E  Y  ++  G G+VE+ + ++M++ + KLDDTKF        YIR+ E
Sbjct:   47 GPDPRSPRRGPPPRRSGYRVIVSGLPDTGSWQDLKDHMRDAGEICYADVFRDGTGVVEYTNYEDMKYALRKLDDTKFKSHEGEVTYIRVKE 137          
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0J9Y154_BRUMA (Bm7293, isoform a n=13 Tax=Onchocercidae TaxID=6296 RepID=A0A0J9Y154_BRUMA)

HSP 1 Score: 75.1 bits (183), Expect = 1.990e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   13 GPDRYSQKKGP--RRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGD-----YIRLTE 264
            GPD  S ++GP  RR+ YRV ++GLP   SWQDLK   R   E  Y  ++  G G+VE+ + ++M++ + KLDDTKF        YIR+ E
Sbjct:  107 GPDSRSPRRGPPPRRSGYRVIVSGLPDTGSWQDLKDHMRDAGEICYADVFRDGTGVVEYTNYEDMKYALRKLDDTKFKSHEGEVTYIRVKE 197          
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0D2MLY2_9CHLO (Splicing factor, arginine/serine-rich 1/9 (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MLY2_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 2.920e-13
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   49 RTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYT-KGE--GLVEFNSLDEMEHVINKLDDTKFNGDY----IRLTED 267
            R+ YRV + GLPP  SWQDLK  FR   +P +V +   +GE  G+ +F + DEM+HVI KLDDT+F   +    IR+TED
Sbjct:  105 RSGYRVTVRGLPPSASWQDLKDHFRMVTKPIFVDVIRDRGETIGVADFETRDEMDHVIRKLDDTEFKNPFEQCFIRITED 184          
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0M3IRK5_ASCLU (RRM domain-containing protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3IRK5_ASCLU)

HSP 1 Score: 73.2 bits (178), Expect = 3.130e-13
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   43 PRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFN---GD--YIRLTE 264
            PRR+ YRV ++GLP   SWQDLK   R   +  Y  +Y  G G+VE+   D+M++ I KLDDTKF    GD  YIR+ E
Sbjct:   63 PRRSGYRVIVSGLPSSGSWQDLKDHMRDAGDICYADVYRDGTGVVEYTKYDDMKYAIRKLDDTKFKSHEGDTSYIRVRE 141          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMT6_ECTSI4.030e-5389.58RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
K3WQ99_GLOUD5.130e-1639.81RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A2H1BVR1_FASHE6.200e-1644.57Serine/arginine-rich splicing factor 1 n=1 Tax=Fas... [more]
A0A5D6YQ52_9STRA3.110e-1543.90Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A183B9U7_9TREM7.300e-1548.05Uncharacterized protein n=1 Tax=Echinostoma capron... [more]
A0A0P1ACL5_PLAHL2.520e-1441.05Serine arginine-rich splicing factor 1-like n=1 Ta... [more]
J9DZB2_WUCBA1.200e-1342.86Alternative splicing regulator (Fragment) n=1 Tax=... [more]
A0A0J9Y154_BRUMA1.990e-1342.86Bm7293, isoform a n=13 Tax=Onchocercidae TaxID=629... [more]
A0A0D2MLY2_9CHLO2.920e-1348.75Splicing factor, arginine/serine-rich 1/9 (Fragmen... [more]
A0A0M3IRK5_ASCLU3.130e-1348.10RRM domain-containing protein n=1 Tax=Ascaris lumb... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7699contigM-pyrifera_M_contig7699:529..4450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue1e-43
Seed eggNOG ortholog2880.D7FMT6
KEGG koko:K12890
KEGG Pathwayko03040,ko04657,ko05168,map03040,map04657,map05168
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0105@2759
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-21_000220.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Exons5
Model size436
Cds size435
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7699.18149.1prot_M-pyrifera_M_contig7699.18149.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7699 529..4449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.3033907-CDS-M-pyrifera_M_contig7699:528..6411622816670.3033907-CDS-M-pyrifera_M_contig7699:528..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 529..641 +
1692278109.5508564-CDS-M-pyrifera_M_contig7699:528..6411692278109.5508564-CDS-M-pyrifera_M_contig7699:528..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 529..641 +
1622816670.3164155-CDS-M-pyrifera_M_contig7699:1374..15221622816670.3164155-CDS-M-pyrifera_M_contig7699:1374..1522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 1375..1522 +
1692278109.5644326-CDS-M-pyrifera_M_contig7699:1374..15221692278109.5644326-CDS-M-pyrifera_M_contig7699:1374..1522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 1375..1522 +
1622816670.3298416-CDS-M-pyrifera_M_contig7699:3084..31791622816670.3298416-CDS-M-pyrifera_M_contig7699:3084..3179Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 3085..3179 +
1692278109.5742364-CDS-M-pyrifera_M_contig7699:3084..31791692278109.5742364-CDS-M-pyrifera_M_contig7699:3084..3179Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 3085..3179 +
1622816670.3403668-CDS-M-pyrifera_M_contig7699:3629..36591622816670.3403668-CDS-M-pyrifera_M_contig7699:3629..3659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 3630..3659 +
1692278109.588783-CDS-M-pyrifera_M_contig7699:3629..36591692278109.588783-CDS-M-pyrifera_M_contig7699:3629..3659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 3630..3659 +
1622816670.3505914-CDS-M-pyrifera_M_contig7699:4400..44491622816670.3505914-CDS-M-pyrifera_M_contig7699:4400..4449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 4401..4449 +
1692278109.6001017-CDS-M-pyrifera_M_contig7699:4400..44491692278109.6001017-CDS-M-pyrifera_M_contig7699:4400..4449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 4401..4449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7699.18149.1

>prot_M-pyrifera_M_contig7699.18149.1 ID=prot_M-pyrifera_M_contig7699.18149.1|Name=mRNA_M-pyrifera_M_contig7699.18149.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
GLRGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQ
IYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRLTEDAKCKERRPKEE
KSTKVTRSQSRSRSRSKSRSRGRRSPSRSRASNRKRARSPSRSRS
back to top

mRNA from alignment at M-pyrifera_M_contig7699:529..4450+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7699.18149.1 ID=mRNA_M-pyrifera_M_contig7699.18149.1|Name=mRNA_M-pyrifera_M_contig7699.18149.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3922bp|location=Sequence derived from alignment at M-pyrifera_M_contig7699:529..4450+ (Macrocystis pyrifera P11B4 male)
GGCCTACGAGGCGGACCAGACAGGTACTCTCAGAAGAAGGGTCCCCGCCG CACTGACTACCGCGTCAACCTCACTGGCCTTCCGCCGGGCACGTCGTGGC AGGACCTCAAGAGGTAGGTAGGGAGAGGGGAAGGGGCGGGGCGGGCAGGA GGAGGTGGTTATTGGTGAAGCCTCGCGACGGCAATGTGTTATGTCGTCAT ACCTGTGTTCCTGTCTTGCCTCGTACAGTATAGGCCCGCGAATAAGAAAG TGCCCAATAAGAACATGATGCTCATTTTTTGGAGAACGCTAGGAAAATTG GGTGAAAGAAAACGCCTCGGTGGTGAAATCTATACTAAATCCTGTATAAT AGCGTATGCTCAAGGTTGTTTGAAGACAGCGTCCCAGTAAGAATCTCAGG CTTGCCCAGATTACGTAGGTGTTTCTTGTTGGCGGGCCCATACTGTATGT ACTGCTGTCGTGTTGCTGTGTCGTCATGCTGTCTCACCATGATCTATTAA TATCCTACTGCTGTCCCATCGTGCTGTCCTACTTGCCTACTGTATATCCT ACTGTCTGGCCTATCTTACTGTCTTATTGTCTGTCCTATCTTGTTGTTCT ACTGGCTGAGCTATGTTCCTGTCCTACTGTCGGCTCTATCTTACTGTTCT ACTGTCCGCCCTATGCTACTGTCTTACTGTTCTACTGTCCGCCCTATGCT ACTGTCTTACTGTTCTACTGTCGGCCCTATCCTACTATCTGCCCTATCTT ACTGCCCTACTGTCTGATCTATCTTATTTTTCTACTGTCTGCCCTCTTCT ACTCTCCTACTCTGTCCTACCCGATACTTGGATGTGCCGAATAAAGCCTA TTTCGTAAGTACGCAGAGCCCGGGTACGTGCAGATCTACACGAAGGGGGA GGGCTTAGTGGAGTTCAACTCGCTGGATGAAATGGAGCACGTTATCAACA AGCTGGACGATACCAAGTTCAACGGTGACTACATCCGCCTCACGGTACGC CGGTCCTATCATTTTATTGGTTGTTCGTTTTGTCTTGATCGTTTCATTGA TCGCTCGTTTTAGTTCTTGACGTTCAATTGGCTACTGTCTTGTCTCGATC ATGTCATTGGCTGCCGGTTTTCCTCTCGATCAGTTTTTATTGACTGGTCT CGTTCACTTCCATTTCACTGACTGCTGATTTTGTCTGCTATTTCATAAGT TACTCATTGGGCATTGTTTTTGTATTGACTCGTTTATTATCCTTTTCAGT TTAGTCCTGACATTTTTCTCAATCTGTTTCGTCTCAATCGTGTGATTGGC TGCCCGTTTTGTCTCGTACATGTGATTGGGTGCTCAATTTGTCTCTCGGT CATTCGATTGGTTCATCGTTTCTTCTCGCTCACTTCTTTTCTCGGTCGTT TGATTGGTTGATCAGTTGATTGGTTGCCTGTTTTACCTGGATCACTTGAT TGGTTGCCCTTGTCATCTCGATCATTTCATTAGCTGCTCGTTTGTTGGCG TGTTCCTGTTAAGGGGTTGTTGAGTGTTCTGCGATGGTTAAGATGGGTAT AGAATCGTGCACCACTCCCTGGACAGTAGACTCAACAGTAGTCTGTTGCT TCGACGGTAGGCGAGGAGAGAAATCTACTGGGGTCCATTGTCGGCCACAA TATATTACTACTGTGAAACTTGTCTATTCATAGATGTTGACGATATTAGA TCAAAAGGAAAGTTGGCATAAATAGTGTTATGTCTTGACAATAGTCGAGG GATACTGTCAATCGATAGACATTGTCTTCTGAACCGAATCCATCGATGGC CAATGCCGTCCGCACTAGGCAGTGTGACTGTCAGTGCCTGTGTAGTGCCT GTACGCGTATAGTGCCTGTATAGTGCCTGTATAGTGTCTGTATAGTGTCT GTATAGTGTCTGTATAGTGTCTGTATAGTGTCTGTAAGGACCGTGTGCGT ATTCAGATTTTTTCCGTGGAGAGTCCTTACTTTTCTCGACAGGGCTACCT GCTACTATTACCTGCTATCTGCTACCTGCTACCTGCTATTAATCCCTGCT ATCTGCTACGTGCTACTTTATGAGTGCCGTGTCGCCTGTTGATGCATACT GTGGGCATTATTCAGTGGTTGATTATGTTTACTGCTGCTGGTAGCAAGAC GCGAGGTGTAATCTTATTGATGGTAGTGATCGTTTGTTTTTTTCGTTTAT GATTAATGTCACTTGTACTGTGTGTTGTCTTATGTAATAAACCGTTTTTC TCCCCGACGAAATCAGTGCACCTAGTGTCCGTCCTGATCGATCCTCCTAT TAAATTGAAACATTACTGGTATTACATCAATTATGTCGTGACACACTGAA ACAGATAAAACCAAAAGGATCGTTTCAGGGCAACCAAATGAAGTGCCAAC ACACCCGGGTACGAAAACACATCAAAACAAGCCAGACGAGAAGCTAAGAA AGAAAAAATATCGATGCTGATTAGTTTTATACCTGGTACCTCGTATTTGT TCATTGTTGACATTTCTATGAACGACGTGATGCTGTGATGCTATGTGATG TATTAGGAGGACGCAAAGTGCAAGGAGAGACGCCCGAAGGAAGAAAAGTC TACCAAGGTTACCCGCTCACAATCGCGATCCAGGTCCAGATCCAAGTCCA GGTAATACCACGGTAATAATACGGTGCGCTTTACGGTGCTCTTCATGGTT CGCTTTACGGTATGCTGATGCTTTTTAGTTTCGGCGGTGTGTGGTAAATC TGTGATTTTGTACAGAACGACGATGGCCACCATCGATGCACAAAGTGTGA GGTTGTTCGTAGAATGCGGATGAATTATAGTTCTGAATGAGTGTATGACT GTGTCTTCCGAACGCTGAGGTCGCTGCTGTCGGGGCTGTTGCTGCTGCCT CTGCTGCTGCTGCTGCTGTTGTATTGACATGGGTTCTCCTCCTCGTCCCC CTTCCCGTCCTTCCCGTCTGACCCGACTCACGCTGATTGTATCTGTATGT TGTGTGCGTGTCATGTTATTCTGCCATGCCGTGGTACGTCGAACGGTCCT GCTTTGAACGACTCTTTCCAACGGGAACATCGCGGTTTGATCCATCGTTA GGTCGAGGGGTCGCCGCTCACCCTCTCGCAGGTTAGTTTTTTTCTTGTTT GTTTTTCTCACCGCATTTTTTATCGTCGCCCTCGTTCCTCGTGCTCCTTC CCTAGACGTAACTCAGATCCGGGGTCACAGCAGTCCCCACCCTCCTCTCA CTGCGGTGCACGCCTTTTACTTAGTAGTACCAGGTATTATTTACTGTAGT ACTTCGGAGAACTACAGTAAGTTATGTTGCTGAAGTTCAATACAGTCTCC GAGCAATATTTGGTGTCTTGATGTTCAATAAATAGTCTTCAGGCTGTCGT GTTTAGACCAATCAACGCGCGTGCGCTCGTAAAACCGGTCGTTATCGCCG ATAACTGTCAGGCTGAATGAATAAAAGACGGTTTCATGGATGCTTTTGTG CGTTGTGAGTTATGACGCTTGAGTGTTCACATGCTGCTCCTCGTTTCCCG TGTGTATGTGGTTGTGCTCGTATCTCGTGGTGTGCGTGATTGTGTTTGCT TGTGTACGTGCGTGATTGTGTTTGCTTGTGTGTTTGTGTGCGTTGTGAGT TGTGACGCTTGAGTGCCCACACGCTGGTATTTTTTTCCCGTGTGTATGTG ATTGTGTTTGTTTCTATCATTGTGTGCTCATGATGTGTGTACGTGTGTGT GTCAGTGTCTGTGCTTTCTTGTGTTTGCTGGCTTCCGTGGTCTGAGTGCT CACACGCTGCTCGCTGCTCCTTTTCTCCTTGTGTCTTTGTGTTTGTCTGT GGGTCGGGTCTCTGTATATCAGTCGTGCTAGCAACCGCAAGAGGGCGCGC AGCCCCAGCCGGTCGCGGTCGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7699:529..4450+

>mRNA_M-pyrifera_M_contig7699.18149.1 ID=mRNA_M-pyrifera_M_contig7699.18149.1|Name=mRNA_M-pyrifera_M_contig7699.18149.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig7699:529..4450+ (Macrocystis pyrifera P11B4 male)
GGCCTACGAGGCGGACCAGACAGGTACTCTCAGAAGAAGGGTCCCCGCCG
CACTGACTACCGCGTCAACCTCACTGGCCTTCCGCCGGGCACGTCGTGGC
AGGACCTCAAGAGGGCCTACGAGGCGGACCAGACAGGTACTCTCAGAAGA
AGGGTCCCCGCCGCACTGACTACCGCGTCAACCTCACTGGCCTTCCGCCG
GGCACGTCGTGGCAGGACCTCAAGAGCCTATTTCGTAAGTACGCAGAGCC
CGGGTACGTGCAGATCTACACGAAGGGGGAGGGCTTAGTGGAGTTCAACT
CGCTGGATGAAATGGAGCACGTTATCAACAAGCTGGACGATACCAAGTTC
AACGGTGACTACATCCGCCTCACGCCTATTTCGTAAGTACGCAGAGCCCG
GGTACGTGCAGATCTACACGAAGGGGGAGGGCTTAGTGGAGTTCAACTCG
CTGGATGAAATGGAGCACGTTATCAACAAGCTGGACGATACCAAGTTCAA
CGGTGACTACATCCGCCTCACGGAGGACGCAAAGTGCAAGGAGAGACGCC
CGAAGGAAGAAAAGTCTACCAAGGTTACCCGCTCACAATCGCGATCCAGG
TCCAGATCCAAGTCCAGGAGGACGCAAAGTGCAAGGAGAGACGCCCGAAG
GAAGAAAAGTCTACCAAGGTTACCCGCTCACAATCGCGATCCAGGTCCAG
ATCCAAGTCCAGGTCGAGGGGTCGCCGCTCACCCTCTCGCAGGTCGAGGG
GTCGCCGCTCACCCTCTCGCAGTCGTGCTAGCAACCGCAAGAGGGCGCGC
AGCCCCAGCCGGTCGCGGTCGTCGTGCTAGCAACCGCAAGAGGGCGCGCA
GCCCCAGCCGGTCGCGGTCG
back to top