mRNA_M-pyrifera_M_contig7699.18149.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: D7FMT6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT6_ECTSI) HSP 1 Score: 181 bits (460), Expect = 4.030e-53 Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 1 Query: 1 GLRGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRLTEDAKCKERR 288 GLRGGPDRYSQKKGPRRTDYRVNL+GLP GTSWQD+KSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVI KLD+TKF+G+YIRL ED KCK RR Sbjct: 125 GLRGGPDRYSQKKGPRRTDYRVNLSGLPSGTSWQDIKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARR 220
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: K3WQ99_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ99_GLOUD) HSP 1 Score: 80.1 bits (196), Expect = 5.130e-16 Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 1 Query: 13 GPDRYSQ--KKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRLT---EDAKCKERRPKEEKS 306 G DR+ + + P RT++RV ++ LP GT W+++K R E Y I + G L EF S D+ME+ I KLDDT+F G+Y+R+T D + + R P ++S Sbjct: 39 GGDRFERNARTPPTRTEFRVRVSDLPRGTDWRNVKDFLRSGGEVTYCNIESDGTALAEFQSKDDMENAIKKLDDTEFRGNYVRITAEGSDRRSRSRSPPRDRS 141
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A2H1BVR1_FASHE (Serine/arginine-rich splicing factor 1 n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1BVR1_FASHE) HSP 1 Score: 80.9 bits (198), Expect = 6.200e-16 Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 7 RGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNG-----DYIRLTED 267 RGG R S PRR+D+RV +TGLPP SWQDLK R+ + GY ++ G G+VEF ++M++ I +LDD+KF YIR+ E+ Sbjct: 100 RGGMGRNSTGGPPRRSDFRVIVTGLPPTGSWQDLKDHMREAGDVGYTDVFRDGTGVVEFLRYEDMKYAIRRLDDSKFRSHEGESSYIRVREE 191
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 3.110e-15 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 13 GPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRL 258 G DR + + P+RTD+RV +T LP GT W+++K R E Y I G + EF S ++M++ I KLDDT+F G+Y+RL Sbjct: 104 GFDRGAGRNPPQRTDFRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRL 185
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A183B9U7_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183B9U7_9TREM) HSP 1 Score: 77.8 bits (190), Expect = 7.300e-15 Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 7 RGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKF 237 RGG R S PRR+D+RV +TGLPP SWQDLK R+ + GY ++ G G+VEF ++M++ I +LDD+KF Sbjct: 99 RGGFGRGSAGGPPRRSDFRVIVTGLPPTGSWQDLKDHMREAGDVGYTDVFRDGTGVVEFLRYEDMKYAIRRLDDSKF 175
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0P1ACL5_PLAHL (Serine arginine-rich splicing factor 1-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACL5_PLAHL) HSP 1 Score: 78.2 bits (191), Expect = 2.520e-14 Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 1 Query: 1 GLRGGPDRYSQ---------KKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGDYIRL 258 G RG DR+S+ + P+RTDYRV +T LP W+++K R E Y I T G + EF + D+ME I KLDDT+F G Y+R+ Sbjct: 185 GRRGDDDRFSRXXXXXXXXGRNPPQRTDYRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIETDGSAIAEFQTKDDMEDAIKKLDDTEFRGSYVRV 279
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: J9DZB2_WUCBA (Alternative splicing regulator (Fragment) n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=J9DZB2_WUCBA) HSP 1 Score: 74.7 bits (182), Expect = 1.200e-13 Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 Query: 13 GPDRYSQKKGP--RRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGD-----YIRLTE 264 GPD S ++GP RR+ YRV ++GLP SWQDLK R E Y ++ G G+VE+ + ++M++ + KLDDTKF YIR+ E Sbjct: 47 GPDPRSPRRGPPPRRSGYRVIVSGLPDTGSWQDLKDHMRDAGEICYADVFRDGTGVVEYTNYEDMKYALRKLDDTKFKSHEGEVTYIRVKE 137
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0J9Y154_BRUMA (Bm7293, isoform a n=13 Tax=Onchocercidae TaxID=6296 RepID=A0A0J9Y154_BRUMA) HSP 1 Score: 75.1 bits (183), Expect = 1.990e-13 Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 Query: 13 GPDRYSQKKGP--RRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFNGD-----YIRLTE 264 GPD S ++GP RR+ YRV ++GLP SWQDLK R E Y ++ G G+VE+ + ++M++ + KLDDTKF YIR+ E Sbjct: 107 GPDSRSPRRGPPPRRSGYRVIVSGLPDTGSWQDLKDHMRDAGEICYADVFRDGTGVVEYTNYEDMKYALRKLDDTKFKSHEGEVTYIRVKE 197
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0D2MLY2_9CHLO (Splicing factor, arginine/serine-rich 1/9 (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MLY2_9CHLO) HSP 1 Score: 74.7 bits (182), Expect = 2.920e-13 Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1 Query: 49 RTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYT-KGE--GLVEFNSLDEMEHVINKLDDTKFNGDY----IRLTED 267 R+ YRV + GLPP SWQDLK FR +P +V + +GE G+ +F + DEM+HVI KLDDT+F + IR+TED Sbjct: 105 RSGYRVTVRGLPPSASWQDLKDHFRMVTKPIFVDVIRDRGETIGVADFETRDEMDHVIRKLDDTEFKNPFEQCFIRITED 184
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Match: A0A0M3IRK5_ASCLU (RRM domain-containing protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3IRK5_ASCLU) HSP 1 Score: 73.2 bits (178), Expect = 3.130e-13 Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 43 PRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVINKLDDTKFN---GD--YIRLTE 264 PRR+ YRV ++GLP SWQDLK R + Y +Y G G+VE+ D+M++ I KLDDTKF GD YIR+ E Sbjct: 63 PRRSGYRVIVSGLPSSGSWQDLKDHMRDAGDICYADVYRDGTGVVEYTKYDDMKYAIRKLDDTKFKSHEGDTSYIRVRE 141 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7699.18149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7699.18149.1 >prot_M-pyrifera_M_contig7699.18149.1 ID=prot_M-pyrifera_M_contig7699.18149.1|Name=mRNA_M-pyrifera_M_contig7699.18149.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp GLRGGPDRYSQKKGPRRTDYRVNLTGLPPGTSWQDLKSLFRKYAEPGYVQback to top mRNA from alignment at M-pyrifera_M_contig7699:529..4450+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7699.18149.1 ID=mRNA_M-pyrifera_M_contig7699.18149.1|Name=mRNA_M-pyrifera_M_contig7699.18149.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3922bp|location=Sequence derived from alignment at M-pyrifera_M_contig7699:529..4450+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7699:529..4450+ >mRNA_M-pyrifera_M_contig7699.18149.1 ID=mRNA_M-pyrifera_M_contig7699.18149.1|Name=mRNA_M-pyrifera_M_contig7699.18149.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig7699:529..4450+ (Macrocystis pyrifera P11B4 male)back to top |