prot_M-pyrifera_M_contig75880.17908.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig75880.17908.1
Unique Nameprot_M-pyrifera_M_contig75880.17908.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length92
Homology
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A7S0PFG6_CAFRO (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PFG6_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 3.760e-15
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTL 50
            ASVVLE A ERH   GKY D P+G FVVRGEN+V+IAELDEAKE  HP L
Sbjct:   84 ASVVLEKAVERHHAAGKYADTPVGTFVVRGENIVLIAELDEAKEKAHPAL 133          
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A5A8EHE8_CAFRO (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHE8_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 5.970e-15
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTL 50
            ASVVLE A ERH   GKY D P+G FVVRGEN+V+IAELDEAKE  HP L
Sbjct:   50 ASVVLEKAVERHHAAGKYADTPVGTFVVRGENIVLIAELDEAKEKAHPAL 99          
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A5A8C2S2_CAFRO (MFS domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C2S2_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 8.710e-14
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTL 50
            ASVVLE A ERH   GKY D P+G FVVRGEN+V+IAELDEAKE  HP L
Sbjct:   50 ASVVLEKAVERHHAAGKYADTPVGTFVVRGENIVLIAELDEAKEKAHPAL 99          
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: W4GDA2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GDA2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.580e-11
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 0
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGM 84
            A++VLE   ERH  G  Y D PLG++++RGEN+V++ ELD+AKE E   L      + +   +E+ E+       PT ++ W  
Sbjct:   16 ANIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQG-----LPTVRDAWNF 94          
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A812NMD7_9DINO (Eefsec protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NMD7_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 2.110e-10
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGM 84
            +++VLED  ERH   GK  D PLG+++VRG+ +V++AELD  KE   P + P+ D++ V+     EEE   A  + T KE+W M
Sbjct:  669 SNLVLEDTMERHVAAGKMCDIPLGLYIVRGDTIVLVAELDAEKEAALP-VEPA-DIEEVIGLEIAEEEAAIAAGRETYKESWNM 750          
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A6G0XJC2_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJC2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.590e-10
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 0
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGM 84
            +++VLE+  ERH  G  Y D PLG++++RGEN+V++ ELD+AKE     L      + +   +E++E+      Q T ++TW  
Sbjct:   39 SNIVLEETCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAADENLVRKTAEEVLTAEMEQQEQG-----QATVRDTWNF 117          
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A485L216_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L216_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.710e-10
Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 0
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGM 84
            +++VLED  ERH  G  Y D PLG++++RGEN+V++ ELD+ KE     L      + +   +E+ E+      QPT ++ W  
Sbjct:   40 SNIVLEDTCERHVVGTTYCDIPLGLYIIRGENIVLMGELDQEKEAADENLTRKSPEEVLTAEMEQMEQG-----QPTVRDAWNF 118          
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A7S0I2C3_9CRYP (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I2C3_9CRYP)

HSP 1 Score: 64.3 bits (155), Expect = 2.830e-10
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0
Query:    2 SVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLR--PSEDLDTVVDAIEEEEERKKALLQPTAKETWGMG 85
            +VVLEDA ERH  G  Y D+ +G++V+RGENLV++AELD  KE   P LR  P + +     A++ E+   + L +  + +  G+G
Sbjct:  169 NVVLEDAFERHVVGNSYADERMGLYVIRGENLVLLAELDMHKEQNQPKLREVPLQTIMAQKAALKHEKAEDELLRKKLSAQALGLG 254          
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: W4GB80_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB80_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.910e-10
Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 0
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGM 84
            +++VLE   ERH  G  Y D PLG++++RGEN+V++ ELD+AKE E   L      + +   +E+ E+       PT ++ W  
Sbjct:   42 SNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQG-----LPTVRDAWNF 120          
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A8K1FQE7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQE7_PYTOL)

HSP 1 Score: 61.6 bits (148), Expect = 4.550e-10
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 0
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGMGEA 87
            ++++LED  ERH  GG + D  LG+ ++RG+N+V++ ELDE KE + P ++ +      ++ + E EER  A    + +E WG   A
Sbjct:   50 SNIILEDTYERHVAGGLFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRAS-----MEEVLEAEERLNADGASSVREQWGFDAA 131          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0PFG6_CAFRO3.760e-1572.00U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=C... [more]
A0A5A8EHE8_CAFRO5.970e-1572.00U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=C... [more]
A0A5A8C2S2_CAFRO8.710e-1472.00MFS domain-containing protein n=3 Tax=Cafeteria ro... [more]
W4GDA2_9STRA7.580e-1136.90Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A812NMD7_9DINO2.110e-1042.86Eefsec protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A6G0XJC2_9STRA2.590e-1035.71U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
A0A485L216_9STRA2.710e-1035.71U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
A0A7S0I2C3_9CRYP2.830e-1040.70U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H... [more]
W4GB80_9STRA3.910e-1035.71U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=A... [more]
A0A8K1FQE7_PYTOL4.550e-1035.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..89
e-value: 4.6E-11
score: 44.5
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 1..75
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 1..75
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75880contigM-pyrifera_M_contig75880:235..510 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75880.17908.1mRNA_M-pyrifera_M_contig75880.17908.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig75880 235..510 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig75880.17908.1 ID=prot_M-pyrifera_M_contig75880.17908.1|Name=mRNA_M-pyrifera_M_contig75880.17908.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTL
RPSEDLDTVVDAIEEEEERKKALLQPTAKETWGMGEAEGEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf