prot_M-pyrifera_M_contig75857.17895.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig75857.17895.1
Unique Nameprot_M-pyrifera_M_contig75857.17895.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length108
Homology
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BLAST of mRNA_M-pyrifera_M_contig75857.17895.1 vs. uniprot
Match: A0A848UGL0_9ACTN (GGDEF domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UGL0_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 9.560e-10
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 0 
Query:    4 HLELVTAAGNDVILASQLLTERADAQTRQAIATIATLAILSIAFAIALTRFIGRPLKLLAETATKLRDGESDEDFQPRGPSEIRQAAYALNDAGANIRLVERQAK 108
            H +LVTAAG D    S + TERA      A+  I  L +LS+  A+AL RFI RPL+ +A     +R G         GP E+R+   A+ +A A++ L E+QA+
Sbjct:  311 HGDLVTAAGADAAEHSAVATERAARSASTALWAIGGLTVLSLGSALALARFIARPLRRMAAATLAVRRGVVPSGDVVNGPMEVRRVGTAVIEAAAHVALAEQQAR 415
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75857.17895.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A848UGL0_9ACTN9.560e-1039.05GGDEF domain-containing protein n=1 Tax=Ilumatobac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003660HAMP domainSMARTSM00304HAMP_11coord: 53..105
e-value: 0.002
score: 27.4
IPR003660HAMP domainPFAMPF00672HAMPcoord: 51..100
e-value: 8.5E-7
score: 29.3
IPR003660HAMP domainPROSITEPS50885HAMPcoord: 53..105
score: 8.342
NoneNo IPR availableGENE3D1.20.1480.50coord: 17..108
e-value: 1.3E-5
score: 27.1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 53..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..52
NoneNo IPR availableTMHMMTMhelixcoord: 33..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75857contigM-pyrifera_M_contig75857:7..330 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75857.17895.1mRNA_M-pyrifera_M_contig75857.17895.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig75857 7..330 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig75857.17895.1 ID=prot_M-pyrifera_M_contig75857.17895.1|Name=mRNA_M-pyrifera_M_contig75857.17895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
SDLHLELVTAAGNDVILASQLLTERADAQTRQAIATIATLAILSIAFAIA
LTRFIGRPLKLLAETATKLRDGESDEDFQPRGPSEIRQAAYALNDAGANI
RLVERQAK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003660HAMP_dom