prot_M-pyrifera_M_contig74931.17707.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig74931.17707.1
Unique Nameprot_M-pyrifera_M_contig74931.17707.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length155
Homology
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BLAST of mRNA_M-pyrifera_M_contig74931.17707.1 vs. uniprot
Match: A0A5A8DWB8_CAFRO (C2H2-type domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DWB8_CAFRO)

HSP 1 Score: 71.2 bits (173), Expect = 1.640e-11
Identity = 51/140 (36.43%), Postives = 70/140 (50.00%), Query Frame = 0 
Query:   11 ALEELDRLESVISEALDRRPEHVVGVIRTDRVIARALKRHQELSGEVYDMLRDSDGLLAGEGAGVRTGEAA-------LSAFDESVSRLTSYYDSHPEVQDAASSLHVVTKELSKGGEPQGAVATEELFSGPEQLGQCLD 143
            +LE++DRLE  I +A+D RP    G ++TD  IA AL R +E S  V  M  DSDGL A E   +R G+A        L+AFD   +    Y+ +HP   + + +      +L  G            FSGPE LG+ LD
Sbjct:   23 SLEDIDRLELGIQQAIDERPTSHWGALQTDSRIAAALSRIEEKSKAVLGMYADSDGLRAEEIKAMRGGDAGIMDTAALLAAFDARAAESAEYFATHPGATEISEAPAAALADLPTGVS----------FSGPEVLGRFLD 152
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74931.17707.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8DWB8_CAFRO1.640e-1136.43C2H2-type domain-containing protein n=4 Tax=Cafete... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..28
NoneNo IPR availablePANTHERPTHR12786SPLICING FACTOR SF3A-RELATEDcoord: 7..154
IPR031776Splicing factor 3A subunit 3PANTHERPTHR12786:SF2SPLICING FACTOR 3A SUBUNIT 3coord: 7..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74931contigM-pyrifera_M_contig74931:200..718 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74931.17707.1mRNA_M-pyrifera_M_contig74931.17707.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig74931 200..718 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig74931.17707.1 ID=prot_M-pyrifera_M_contig74931.17707.1|Name=mRNA_M-pyrifera_M_contig74931.17707.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
MAFPGDRARHALEELDRLESVISEALDRRPEHVVGVIRTDRVIARALKRH
QELSGEVYDMLRDSDGLLAGEGAGVRTGEAALSAFDESVSRLTSYYDSHP
EVQDAASSLHVVTKELSKGGEPQGAVATEELFSGPEQLGQCLDFEEHLKA
YKNLP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031776SF3A3