prot_M-pyrifera_M_contig74890.17700.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig74890.17700.1
Unique Name	prot_M-pyrifera_M_contig74890.17700.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	250

Homology

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BLAST of mRNA_M-pyrifera_M_contig74890.17700.1 vs. uniprot
Match: A0A5A8E4B5_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E4B5_CAFRO)

HSP 1 Score: 87.4 bits (215), Expect = 6.890e-16
Identity = 64/172 (37.21%), Postives = 86/172 (50.00%), Query Frame = 0

Query:    3 AVCGGLGAANVTGVEGYWRVPWSKDGLGFALCDSDGACIGHSGRIVATSLSSSPTVYTTNTTSSNSTMESTVVPLWQQEDNDDRDVTLSSIS-------------LIPSYHETCNVGHRGVLCSACAVGYFPGVGGSCTACGNRSWIAGRFFLLC---VAILVAFSIIIVRA 158
            AVCGGL + NVT   G+WRVPWS  GLGFA CD   AC G    + A S S+      TN ++  +   S VV   +      R +  ++++             L P+  E C +G  GVLC ACA GY   VGG C ACG  +  AG   LL    +A L+  ++ ++RA
Sbjct: 2030 AVCGGLPSRNVTARPGWWRVPWSSVGLGFAACDPAEACRGVVAPLPAASASA------TNASAGGAGAVSAVVASAELPTGSRRLLVQTALAFQQSGESGSSSGRLDPARMEGCGLGRTGVLCHACASGYHVDVGGGCAACGEGN--AGALALLLGVGLAALLVVAVFVLRA 2193

[Close]

BLAST of mRNA_M-pyrifera_M_contig74890.17700.1 vs. uniprot
Match: A0A5A8CY79_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CY79_CAFRO)

HSP 1 Score: 56.6 bits (135), Expect = 1.720e-5
Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 0

Query:  172 IMKIIFTHLQTVTIVGGVQLRWPQAARGFFNTVDAGSSFATSGLALECLMGD 223
            ++K++F HLQ ++I+ GV+L WP A    F      SSF+T+GL +EC +G+
Sbjct: 2418 VLKLLFNHLQLLSIISGVRLAWPPAVLSIFEAGQVTSSFSTAGLGVECFLGE 2469

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig74890.17700.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig74890.17700.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A5A8E4B5_CAFRO	6.890e-16	37.21	Uncharacterized protein n=3 Tax=Cafeteria roenberg...	[more]
A0A5A8CY79_CAFRO	1.720e-5	42.31	Uncharacterized protein n=6 Tax=Cafeteria roenberg...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11319	G PROTEIN-COUPLED RECEPTOR-RELATED	coord: 45..250
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 249..250
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 229..248
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 160..228
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 140..159
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..139
None	No IPR available	TMHMM	TMhelix		coord: 135..157
None	No IPR available	TMHMM	TMhelix		coord: 227..249

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig74890	contig	M-pyrifera_M_contig74890:178..927 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig74890.17700.1	mRNA_M-pyrifera_M_contig74890.17700.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig74890 178..942 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig74890.17700.1 ID=prot_M-pyrifera_M_contig74890.17700.1|Name=mRNA_M-pyrifera_M_contig74890.17700.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=250bp
MGAVCGGLGAANVTGVEGYWRVPWSKDGLGFALCDSDGACIGHSGRIVAT
SLSSSPTVYTTNTTSSNSTMESTVVPLWQQEDNDDRDVTLSSISLIPSYH
ETCNVGHRGVLCSACAVGYFPGVGGSCTACGNRSWIAGRFFLLCVAILVA
FSIIIVRAYQTRASTSSKEVQIMKIIFTHLQTVTIVGGVQLRWPQAARGF
FNTVDAGSSFATSGLALECLMGDASSNPFLRTILFLVMPLFLVAYILLFW