prot_M-pyrifera_M_contig74848.17693.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig74848.17693.1
Unique Nameprot_M-pyrifera_M_contig74848.17693.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length74
Homology
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BLAST of mRNA_M-pyrifera_M_contig74848.17693.1 vs. uniprot
Match: A0A507ESL2_9FUNG (YTH domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ESL2_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 2.080e-5
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 0 
Query:   13 PARYFVVKVPNEAMLRTCARRNAWGVERDIATKINHALRSCRAIFLFFSVVNSKGFQGVARL 74
            P RYFV+  PN  M++     NA+     I+TK++ A R+ R + LFF+V +S+ +QG AR+
Sbjct:  525 PIRYFVLISPNYDMIKQSQNINAFATIPAISTKLSEAYRNSRHVVLFFTVKDSRRWQGYARM 586
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BLAST of mRNA_M-pyrifera_M_contig74848.17693.1 vs. uniprot
Match: A0A1X7V720_AMPQE (YTH domain-containing protein n=4 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V720_AMPQE)

HSP 1 Score: 49.7 bits (117), Expect = 3.800e-5
Identity = 26/63 (41.27%), Postives = 32/63 (50.79%), Query Frame = 0 
Query:   12 VPARYFVVKVPNEAMLRTCARRNAWGVERDIATKINHALRSCRAIFLFFSVVNSKGFQGVARL 74
            V  RYFV+K  N   +     +N W        K+N A R CR + L FSV  S GFQG A+L
Sbjct:  162 VNTRYFVIKSNNYENVDIAKSKNVWSTLPYNEKKLNKAYRDCRNVLLIFSVKESGGFQGFAKL 224
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74848.17693.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A507ESL2_9FUNG2.080e-540.32YTH domain-containing protein n=1 Tax=Spizellomyce... [more]
A0A1X7V720_AMPQE3.800e-541.27YTH domain-containing protein n=4 Tax=Amphimedon q... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.590.10coord: 14..74
e-value: 2.3E-14
score: 55.3
IPR007275YTH domainPFAMPF04146YTHcoord: 14..74
e-value: 1.4E-13
score: 51.1
IPR007275YTH domainPROSITEPS50882YTHcoord: 14..74
score: 17.986

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74848contigM-pyrifera_M_contig74848:24..245 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74848.17693.1mRNA_M-pyrifera_M_contig74848.17693.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig74848 24..245 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig74848.17693.1 ID=prot_M-pyrifera_M_contig74848.17693.1|Name=mRNA_M-pyrifera_M_contig74848.17693.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MVGAISEAVKLVPARYFVVKVPNEAMLRTCARRNAWGVERDIATKINHAL
RSCRAIFLFFSVVNSKGFQGVARL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007275YTH_domain