prot_M-pyrifera_M_contig7474.17676.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig7474.17676.1
Unique Nameprot_M-pyrifera_M_contig7474.17676.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length109
Homology
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BLAST of mRNA_M-pyrifera_M_contig7474.17676.1 vs. uniprot
Match: D8LS03_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS03_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 8.000e-45
Identity = 86/126 (68.25%), Postives = 90/126 (71.43%), Query Frame = 0 
Query:    1 PHFRACIVCQRLGG----------APPVTPPAEPPLP--PLLLCSTCPASFHLSCLRPRLRVMPTGGG------WSCAYCFATGRAVGEDPDGACGAVRLMESLRQGMQGSIRVNAMRTLRYNAIG 108
            PHFRACIVCQR G           APP  P A  P    PLLLCSTCPA+FHLSCLRPRLR MP G G      WSCAYC A GR VG D DGACGAVRLMESLRQGM G++RVNAMRTLRYNA+G
Sbjct:  393 PHFRACIVCQRPGTDSNGAAVDGPAPPCLPQARGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEGTGEGGSAKWSCAYCHAMGRVVGGDADGACGAVRLMESLRQGMHGTVRVNAMRTLRYNALG 518
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BLAST of mRNA_M-pyrifera_M_contig7474.17676.1 vs. uniprot
Match: A0A6H5KX53_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX53_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.750e-41
Identity = 84/126 (66.67%), Postives = 90/126 (71.43%), Query Frame = 0 
Query:    1 PHFRACIVCQRLG---GAPPVTPPAEPPL---------PPLLLCSTCPASFHLSCLRPRLRVMPTG---GG---WSCAYCFATGRAVGEDPDGACGAVRLMESLRQGMQGSIRVNAMRTLRYNAIG 108
            PHFRACIVCQR G       V  PA P L          PLLLCSTCPA+FHLSCLRPRLR MP G   GG   WSCAYC A GR +G D DGACGAVRLMESLRQGM G++RVNA+RTLRYNA+G
Sbjct: 1657 PHFRACIVCQRPGTDSNGVAVDEPAPPSLLQTRGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEGTSEGGSAKWSCAYCHAMGRVIGGDADGACGAVRLMESLRQGMHGAVRVNALRTLRYNALG 1782
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7474.17676.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS03_ECTSI8.000e-4568.25PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KX53_9PHAE2.750e-4166.67PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 5..63
e-value: 2.2E-8
score: 43.9
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 26..62
e-value: 4.2E-7
score: 29.8
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 3..65
score: 8.582
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..68
e-value: 9.1E-12
score: 46.6
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 6..62
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 4..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7474contigM-pyrifera_M_contig7474:346..2193 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7474.17676.1mRNA_M-pyrifera_M_contig7474.17676.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig7474 346..2193 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig7474.17676.1 ID=prot_M-pyrifera_M_contig7474.17676.1|Name=mRNA_M-pyrifera_M_contig7474.17676.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
PHFRACIVCQRLGGAPPVTPPAEPPLPPLLLCSTCPASFHLSCLRPRLRV
MPTGGGWSCAYCFATGRAVGEDPDGACGAVRLMESLRQGMQGSIRVNAMR
TLRYNAIG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD