prot_M-pyrifera_M_contig73502.17423.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig73502.17423.1
Unique Nameprot_M-pyrifera_M_contig73502.17423.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length183
Homology
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Match: A0A7S0GBI1_9STRA (Replication protein A subunit n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GBI1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.320e-12
Identity = 54/181 (29.83%), Postives = 87/181 (48.07%), Query Frame = 0
Query:    3 EFVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSSFGDESGGSWQCTRCGSIGAP-HYRYIYSAVLADFSSSQTVTFFDDTAIELLGGTQAGDLV--PLAEKAESGDKDAATALEKKFKEPLWRQSFVTLRCRMEN--VKDELRLQATVVRMRPVDFEYESARLAEAI 178
            ++++VKAT  +     E  PWY +C N+ E  R + +V +            + G W C RC         RYI+SA +AD +S+  V+ FD+ A++ LG     D V       + +GD +    L  K     W      ++C+++N  V DE R++ T+  + P+D+  ES  L EAI
Sbjct:  449 DWMSVKATFSFVKKDKEGGPWYTACVNEEEPCRQRVKVTQT-----------TDGYWHCDRCNKTSEKCKRRYIFSATIADETSTSWVSLFDEQALQFLGEEHTADSVYDRYFSDSSNGDTEGFDGLFAKATSTDW-----IVKCKVKNEMVGDESRVKTTIYSLTPMDYVKESRDLLEAI 613          
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Match: C7YRU9_FUSV7 (Replication protein A subunit n=11 Tax=Fusarium TaxID=5506 RepID=C7YRU9_FUSV7)

HSP 1 Score: 68.9 bits (167), Expect = 2.290e-10
Identity = 57/179 (31.84%), Postives = 89/179 (49.72%), Query Frame = 0
Query:    4 FVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSSFGDESGGSWQCTRCG-SIGAPHYRYIYSAVLADFSSSQTVTFFDDTAIELLGGTQAGDLVPLAEKAESGDKDAATALEKKFKEPLWRQSFVTLRCRMENVKDELRLQATVVRMRPVDFEYESARLAEAIDSY 181
            + T+KAT+V+          YP+C +           + CNK+V+   GD   G+W C +C  S   P YRYI S  +AD +S Q ++ FDD+  ++LG T A +++ L    ES D    TA    F+E   ++     R +M+N  +  R++  V+   P+DF  E  +L E I  Y
Sbjct:  453 YYTIKATIVFMKQDTF---CYPACAS-----------QGCNKKVTE-MGD---GTWHCEKCNVSHEKPEYRYILSLNVADHTSHQWLSCFDDSGQKILGRT-ANEMMELK---ESDDPTKFTAA---FEEANCKKLTFRCRAKMDNFGEAQRIRYQVMSAMPLDFTSEGNKLKEMIKEY 606          
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Match: A0A6A6Q4I4_9PEZI (Replication protein A subunit n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6Q4I4_9PEZI)

HSP 1 Score: 66.6 bits (161), Expect = 1.440e-9
Identity = 49/180 (27.22%), Postives = 91/180 (50.56%), Query Frame = 0
Query:    3 EFVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSSFGDESGGSWQCTRCG-SIGAPHYRYIYSAVLADFSSSQTVTFFDDTAIELLGGTQAGDLVPLAEKAESGDKDAATALEKKFKEPLWRQSFVTLRCRMENVKDELRLQATVVRMRPVDFEYESARLAEAIDSY 181
            ++ ++KAT++Y    +     YP+C ++            CNK+V     +   G W+C +C  +  AP +RYI S  ++D +    ++ F++T  +++G  +A DLV L E+ E  +K  A      F + L +      + +M+   D+ R++  V   +P+DF +ES +LA+ I  Y
Sbjct:  448 DWFSLKATIIYIKQDSVS---YPACRSE-----------NCNKKVV----EVETGQWRCEKCDMTFDAPEHRYIMSINVSDHTGQIWLSAFNETGEQVMG-MKANDLVTLREEGE--EKKVADT----FNDALCKTYIFRCKAKMDTFGDQQRVRYQVQYAKPLDFTFESKKLADLIKEY 602          
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Match: K3VQ88_FUSPC (Replication protein A subunit n=71 Tax=Fusarium TaxID=5506 RepID=K3VQ88_FUSPC)

HSP 1 Score: 65.9 bits (159), Expect = 2.640e-9
Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 0
Query:    4 FVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSSFGDESGGSWQCTRCG-SIGAPHYRYIYSAVLADFSSSQTVTFFDDTAIELLGGTQAGDLVPLAEKAESGDKDAATALEKKFKEPLWRQSFVTLRCRMENVKDELRLQATVVRMRPVDFEYESARLAEAIDSY 181
            + T+KAT+V+     +    Y +C +           + CNK+V+        G+WQC +C  S   P YRYI S  +AD +S Q +T FDD   +++G T A +++ L E  +       T L   F+E   ++     R +M+N  +  R++  V+ + P+DF+ E  +L E I  Y
Sbjct:  450 YYTIKATIVFVK---QENFCYAACLS-----------QGCNKKVT----QMPDGTWQCEKCNLSHEKPEYRYILSLNVADHTSHQWLTGFDDFGRQVMGRT-ADEMMELKENDD-------TKLTAAFEEANCKKFTFRCRAKMDNFGEAQRIRYQVMSVTPLDFKSEGTKLDELIKQY 602          
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Match: A7SJL0_NEMVE (Replication protein A subunit n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SJL0_NEMVE)

HSP 1 Score: 65.9 bits (159), Expect = 2.660e-9
Identity = 57/180 (31.67%), Postives = 93/180 (51.67%), Query Frame = 0
Query:    1 RGEFVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSSFGDESGGSWQCTRCGSIGAPHYRY--IYSAVLADFSSSQTVTFFDDTAIELLGGTQAGDLVPLAEKAESGDKDAATALEKKFKEPLWRQSFVTLRCRMENVKDELRLQATVVRMRPVDFEYESARLAEAI 178
            + ++++VK   VY          Y +CP++           +CNK+V     ++SG  + C +CG    P+Y+Y  I SA LADF+ SQ VT F ++A  LLG + A DL  + E  +    D   A   +FK   ++     +R +ME   +E RL+ +VV + PV+++ ES RL + +
Sbjct:  468 KADYISVKGVCVYFR---RENCMYKACPSE-----------ECNKKV---IEEDSG--FYCEKCGRK-YPNYKYRLILSAHLADFTGSQWVTCFQESAEALLGRS-ASDLGQMKENQDEAQFDQVFA-SSEFKLHTFK-----IRAKMETYNEETRLKCSVVNVVPVNYKQESKRLIDEV 620          
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Match: A0A162I672_9HYPO (Replication protein A subunit n=3 Tax=Clavicipitaceae TaxID=34397 RepID=A0A162I672_9HYPO)

HSP 1 Score: 65.5 bits (158), Expect = 3.540e-9
Identity = 58/182 (31.87%), Postives = 89/182 (48.90%), Query Frame = 0
Query:    4 FVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSSFGDESGGSWQCTRCG-SIGAPHYRYIYSAVLADFSSSQTVTFFDDTAIELLGGTQAGDLVPLAEKAESGDKDAATALE-KKFKEPLWRQSFVTLRCR--MENVKDELRLQATVVRMRPVDFEYESARLAEAIDSY 181
            + ++KAT+V+     +    YP+C  +            CNK+V  + GD   G+W C +C  S   P YRYI S  +AD +S Q ++ F+DT + L+ G  A +L+ L E  ++    A   +  KKF            RCR  M+N  D  R++  V+   P+DF+ E  +LAE I  Y
Sbjct:  416 YYSIKATIVFVK---QENFCYPACSKE-----------GCNKKVIET-GD---GTWHCEKCSVSHDRPDYRYIVSLNVADHTSHQWLSCFNDTGL-LIFGMSANELMELKENDDAKFMAAFETVNCKKF----------NFRCRAKMDNFGDTQRVRYQVMSAAPLDFKTEGNKLAEMIKQY 568          
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Match: A0A369H8A8_9HYPO (Replication protein A subunit n=3 Tax=Ophiocordyceps TaxID=474995 RepID=A0A369H8A8_9HYPO)

HSP 1 Score: 65.1 bits (157), Expect = 4.870e-9
Identity = 58/181 (32.04%), Postives = 88/181 (48.62%), Query Frame = 0
Query:    4 FVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSSFGDESGGSWQCTRCG-SIGAPHYRYIYSAVLADFSSSQTVTFFDDTAIELLGGTQAGDLVPLAEKAESGDKDAATALEKKFKEPLWRQSFVTLRCR--MENVKDELRLQATVVRMRPVDFEYESARLAEAIDSY 181
            + ++KAT+V+          YP+C +           + CNK+V+   GD   GSWQC +C  S   P+YRYI S  +AD +S Q ++ FD+T   L+ G  A +L+ L E  E     A  A+  K          +  RCR  M+N  D  R++  V+    +D++ E+ RL E I  Y
Sbjct:  452 YYSIKATIVFVKQDNF---CYPACSS-----------QGCNKKVTP-LGD---GSWQCEKCNVSHEKPNYRYIMSINVADHTSHQWLSCFDETGC-LIMGRSANELMDLKENDEPAYIAAFDAVNCKK---------LAFRCRAKMDNYGDTQRIRYQVMSASMLDYKAEADRLVELIKQY 604          
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Match: T5ACN6_OPHSC (Replication protein A subunit n=2 Tax=Ophiocordyceps sinensis TaxID=72228 RepID=T5ACN6_OPHSC)

HSP 1 Score: 64.3 bits (155), Expect = 8.940e-9
Identity = 53/179 (29.61%), Postives = 91/179 (50.84%), Query Frame = 0
Query:    4 FVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSSFGDESGGSWQCTRCG-SIGAPHYRYIYSAVLADFSSSQTVTFFDDTAIELLGGTQAGDLVPLAEKAESGDKDAATALEKKFKEPLWRQSFVTLRCRMENVKDELRLQATVVRMRPVDFEYESARLAEAIDSY 181
            + ++KAT+V+    +     YP+C +           + CNK+V+   GD   G+W C +C  S   P++R+I S  +AD +S Q ++ FD+T + ++ G  A +LV L E  E+    A       F+E   ++     R +M+N  D  R++  V+    +DF+ E A+LAE I  +
Sbjct:  441 YYSIKATIVFIKQDSF---CYPACSS-----------QGCNKKVTP-MGD---GTWHCEKCSVSHDKPNHRFIMSLNVADHTSHQWLSCFDETGV-MIFGKSANELVELRENDEAKFMAA-------FEEVNCKKLSFRCRAKMDNYGDTQRVRYQVMNASFLDFKAEGAKLAEMIKQF 593          
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Match: A0A151GTJ2_9HYPO (Replication protein A subunit n=1 Tax=Drechmeria coniospora TaxID=98403 RepID=A0A151GTJ2_9HYPO)

HSP 1 Score: 64.3 bits (155), Expect = 8.950e-9
Identity = 53/179 (29.61%), Postives = 87/179 (48.60%), Query Frame = 0
Query:    4 FVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSSFGDESGGSWQCTRCG-SIGAPHYRYIYSAVLADFSSSQTVTFFDDTAIELLGGTQAGDLVPLAEKAESGDKDAATALEKKFKEPLWRQSFVTLRCRMENVKDELRLQATVVRMRPVDFEYESARLAEAIDSY 181
            + ++KAT+V+          YP+C +           + CNK+V+    D   G+W C +C  S   P+YRYI S  +AD +S Q ++ FD+T   + G T A +L+ L E  E+    A       F+E   ++     R +M+N  D  R++  ++    +DF+ E  +LAE I  Y
Sbjct:  444 YYSIKATIVFVKQDNF---CYPACSS-----------QGCNKKVT----DMGDGTWHCEKCSVSHDKPNYRYILSLNVADHTSHQWLSCFDETGNMVFGKT-ANELMELKENDEAAFMAA-------FEEVNCKKLGFRCRAKMDNYGDAQRVRYQIMSASFLDFKSEGNKLAEMIKQY 596          
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Match: A0A7S4N990_9STRA (Replication protein A subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N990_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.280e-8
Identity = 50/178 (28.09%), Postives = 83/178 (46.63%), Query Frame = 0
Query:    3 EFVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSSFGDESGGSWQCTRCGSIGAPHYR-YIYSAVLADFSSSQTVTFFDDTAIELLGGTQAGDLVPLAEKAESG-DKDAATALEKKFKEPLWRQSFVTLRCRMENVKDELRLQATVVRMRPVDFEYESARLAEAI 178
            E+++ K T  +     E   WY +C N  E  +N+ +V++              G WQC RCG+      R +I+SA +AD +S+  V+ F++ A  +     A D+       ++G D+D   A+  K     W       + + E V DE R++A+V  + PVD+  ES  L  +I
Sbjct:  492 EYLSFKGTFTFLKKDREGGAWYCACSNAGEPCKNRYKVQQT-----------PDGHWQCERCGTTSPTCVRRWIFSATVADETSTTWVSVFNEQAESMFDNRTADDVYNRTMNPDAGMDEDQYNAVFDKANFTDW---IFNCKVKQELVGDETRVKASVSSVAPVDYVKESRNLIASI 655          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73502.17423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0GBI1_9STRA2.320e-1229.83Replication protein A subunit n=1 Tax=Proboscia in... [more]
C7YRU9_FUSV72.290e-1031.84Replication protein A subunit n=11 Tax=Fusarium Ta... [more]
A0A6A6Q4I4_9PEZI1.440e-927.22Replication protein A subunit n=1 Tax=Neohortaea a... [more]
K3VQ88_FUSPC2.640e-929.61Replication protein A subunit n=71 Tax=Fusarium Ta... [more]
A7SJL0_NEMVE2.660e-931.67Replication protein A subunit n=2 Tax=Nematostella... [more]
A0A162I672_9HYPO3.540e-931.87Replication protein A subunit n=3 Tax=Clavicipitac... [more]
A0A369H8A8_9HYPO4.870e-932.04Replication protein A subunit n=3 Tax=Ophiocordyce... [more]
T5ACN6_OPHSC8.940e-929.61Replication protein A subunit n=2 Tax=Ophiocordyce... [more]
A0A151GTJ2_9HYPO8.950e-929.61Replication protein A subunit n=1 Tax=Drechmeria c... [more]
A0A7S4N990_9STRA2.280e-828.09Replication protein A subunit n=1 Tax=Odontella au... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..182
e-value: 4.8E-34
score: 119.3
NoneNo IPR availablePANTHERPTHR23273REPLICATION FACTOR A 1, RFA1coord: 4..174
NoneNo IPR availablePANTHERPTHR23273:SF4REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNITcoord: 4..174
IPR013955Replication factor A, C-terminalPFAMPF08646Rep_fac-A_Ccoord: 4..174
e-value: 4.8E-26
score: 91.3
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73502contigM-pyrifera_M_contig73502:552..1100 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73502.17423.1mRNA_M-pyrifera_M_contig73502.17423.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig73502 552..1100 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig73502.17423.1 ID=prot_M-pyrifera_M_contig73502.17423.1|Name=mRNA_M-pyrifera_M_contig73502.17423.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
RGEFVTVKATVVYAMASAERLPWYPSCPNDIEDERNKGQVRKCNKRVSSS
FGDESGGSWQCTRCGSIGAPHYRYIYSAVLADFSSSQTVTFFDDTAIELL
GGTQAGDLVPLAEKAESGDKDAATALEKKFKEPLWRQSFVTLRCRMENVK
DELRLQATVVRMRPVDFEYESARLAEAIDSYF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013955Rep_factor-A_C
IPR012340NA-bd_OB-fold