prot_M-pyrifera_M_contig72513.17239.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig72513.17239.1
Unique Nameprot_M-pyrifera_M_contig72513.17239.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length240
Homology
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BLAST of mRNA_M-pyrifera_M_contig72513.17239.1 vs. uniprot
Match: V4A1S7_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A1S7_LOTGI)

HSP 1 Score: 77.8 bits (190), Expect = 7.160e-13
Identity = 67/220 (30.45%), Postives = 106/220 (48.18%), Query Frame = 0 
Query:   25 PHDAGVMESPLYRAFVGKD---YQQSFVFANNSTRRAQEETYVPVNRSVSWTAIGVKDGEVIELFVETVGRVLDYCSISPPIAS--CNVLNNTLVSVMLKGPHHRLSLEL---FRNREEGIVDDALLLFTDPLPSPPPSPSS-SVLSFSAGYHRLSGQETVSDDVKTIYFAPGAVVEGGLVLGEGCGVVEIIGEGGVMVGTAFPFLSPDFPWALLEMDAG 235
            P   GV+ S  +   V +    +Q SFV+ ++S  R  +   V  NR+VSWT+ G   G+ + + V TV +    C++ P      C  L     S  +     ++S+E    + + +  IVD  LL+F +P  +  P PS+ SVL +    + L GQ  +S +++ +Y APGA V GG         V I G G ++ G  + F  P F W L+ +D G
Sbjct:   23 PVSPGVVSSDKFSVEVKQGSSAFQGSFVYISHSNNRVGQSPSVKPNRTVSWTSFGFT-GDSVNVNVITV-KDFKECTVRPESYGIPCTRLREKTASFEMTSNTQKISVEFDYDYGSLKSDIVDK-LLIFANPPETYVPEPSNPSVLYYGCDVYDLGGQLQLSSNIRHVYLAPGAFVNGGFRT-TSRHPVTISGRG-ILSGAKYRFHDPRFLWGLINVDIG 237
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72513.17239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
V4A1S7_LOTGI7.160e-1330.45Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 144..222
e-value: 1.7E-9
score: 39.0
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..240
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..15
score: 0.729

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72513contigM-pyrifera_M_contig72513:405..1124 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72513.17239.1mRNA_M-pyrifera_M_contig72513.17239.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig72513 405..1124 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig72513.17239.1 ID=prot_M-pyrifera_M_contig72513.17239.1|Name=mRNA_M-pyrifera_M_contig72513.17239.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=240bp
MPLTFLLLVAPIVAGFINYPPPNLPHDAGVMESPLYRAFVGKDYQQSFVF
ANNSTRRAQEETYVPVNRSVSWTAIGVKDGEVIELFVETVGRVLDYCSIS
PPIASCNVLNNTLVSVMLKGPHHRLSLELFRNREEGIVDDALLLFTDPLP
SPPPSPSSSVLSFSAGYHRLSGQETVSDDVKTIYFAPGAVVEGGLVLGEG
CGVVEIIGEGGVMVGTAFPFLSPDFPWALLEMDAGFGHFV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold