prot_M-pyrifera_M_contig718.17104.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig718.17104.1
Unique Name	prot_M-pyrifera_M_contig718.17104.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	157

Homology

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BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 7.970e-98
Identity = 152/156 (97.44%), Postives = 155/156 (99.36%), Query Frame = 0

Query:    1 MTAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            MT IDP+TVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTIT+GFTHAIS+GNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  409 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 564

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BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 257 bits (656), Expect = 9.750e-77
Identity = 126/155 (81.29%), Postives = 136/155 (87.74%), Query Frame = 0

Query:    2 TAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            T +DP+++DDKDYYGNKRLE AGQLISLLFEDLFKRFN +LKR AD  L+K N A  +DI   L GS  IT GF HAISTGNWV+KRFK+DRQGVTQVLSRLS+IS LGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  382 TVLDPSSLDDKDYYGNKRLESAGQLISLLFEDLFKRFNGDLKRYADTCLAKQNHATPWDISGMLAGSMNITQGFIHAISTGNWVVKRFKMDRQGVTQVLSRLSYISCLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 536

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BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A482SPL4_9ARCH (DNA-directed RNA polymerase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL4_9ARCH)

HSP 1 Score: 252 bits (644), Expect = 3.080e-76
Identity = 123/155 (79.35%), Postives = 138/155 (89.03%), Query Frame = 0

Query:    2 TAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            T  D + +DDKDYYGNKR+ELAG L+SLLFEDLFKRFNS+LKR ADMVLSKPNRA  FDI KF+ G T IT GF HAISTG+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  132 TVQDRSLLDDKDYYGNKRIELAGSLLSLLFEDLFKRFNSDLKRQADMVLSKPNRAGGFDIVKFIRGDT-ITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 285

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BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A7S2WKY6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKY6_9STRA)

HSP 1 Score: 234 bits (596), Expect = 7.000e-75
Identity = 117/156 (75.00%), Postives = 131/156 (83.97%), Query Frame = 0

Query:    1 MTAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            M  +     DDKDYYGNKRLELAG L+SLLFEDLFK FN +LKR AD VLSK NRA AFD+ K +  S TIT G   AISTGNWVLKRF++DR GVTQVLSRLS++S+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   79 MVHLGKEPYDDKDYYGNKRLELAGNLLSLLFEDLFKHFNRDLKRQADQVLSKANRAQAFDVIKCIR-SDTITMGMVMAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 233

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BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A2P4YIY6_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A2P4YIY6_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.950e-74
Identity = 121/156 (77.56%), Postives = 137/156 (87.82%), Query Frame = 0

Query:    1 MTAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
             T  D T +DDKDYYGNKRLELAGQL+SLLFEDLFKRFNS+LKR ADMVLSKPNRA+ FDI K +  + TIT GF HA+STGNW LKRF++DR GVT VLSRLS++S+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   37 FTDKDRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRASVFDILKCIR-TDTITQGFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 191

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BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.370e-74
Identity = 121/155 (78.06%), Postives = 136/155 (87.74%), Query Frame = 0

Query:    2 TAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            T  D + +DDKDYYGNKRLELAG LISLLFEDLFKRFNS+LKR  DM+LSKPNRA  FD+ KF+   T IT GF HAISTG+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  237 TVRDRSLLDDKDYYGNKRLELAGSLISLLFEDLFKRFNSDLKRQVDMILSKPNRAGGFDVMKFMRADT-ITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 390

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BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: M4C4J1_HYAAE (DNA-directed RNA polymerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4J1_HYAAE)

HSP 1 Score: 246 bits (629), Expect = 2.540e-74
Identity = 121/156 (77.56%), Postives = 137/156 (87.82%), Query Frame = 0

Query:    1 MTAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
             T  D T +DDKDYYGNKRLELAGQL+SLLFEDLFKRFNS+LKR ADMVLSKPNRA+ FDI K +  + TIT GF HA+STGNW LKRF++DR GVT VLSRLS++S+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  346 FTDKDRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRASVFDIIKCVR-TDTITQGFFHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 500

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BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A7S3PBU7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU7_9STRA)

HSP 1 Score: 233 bits (595), Expect = 3.490e-74
Identity = 113/148 (76.35%), Postives = 132/148 (89.19%), Query Frame = 0

Query:    9 VDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            +DDKDYYGNKRLELAG L+SLLFEDLFK F+ +LKR AD+VLSKPN A AFD+ K +   T ITNG  +AI+TGNWVLKRF++DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  105 LDDKDYYGNKRLELAGNLLSLLFEDLFKTFSKDLKRQADLVLSKPNLAQAFDVTKTIRPDT-ITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 251

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BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A2G8KFE2_STIJA (DNA-directed RNA polymerase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KFE2_STIJA)

HSP 1 Score: 232 bits (591), Expect = 4.010e-74
Identity = 113/152 (74.34%), Postives = 131/152 (86.18%), Query Frame = 0

Query:    5 DPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            D   VDD+DYYGNKRLELAGQLISLLFEDLFK+FNSELK+ AD ++ KP+RAA FD+ K +     ITNG   AISTGNW LKRFK++R GVTQ+LSRLS+IS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   81 DSFKVDDRDYYGNKRLELAGQLISLLFEDLFKKFNSELKKIADQIIPKPSRAALFDVVKHMR-QDKITNGLNTAISTGNWSLKRFKMERAGVTQILSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 231

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BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A822DRV6_9NEOB (DNA-directed RNA polymerase n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822DRV6_9NEOB)

HSP 1 Score: 229 bits (584), Expect = 5.630e-74
Identity = 114/148 (77.03%), Postives = 130/148 (87.84%), Query Frame = 0

Query:    9 VDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            VDD+DYYGNKRLELAGQL+SLLFEDLFK+FNSE+K+ AD V+ K  RAA FD+ K +     ITNG  +AISTGNW LKRFK+DRQGVTQVLSRLSFIS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   14 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMR-QDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 159

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JAF8_9PHAE	7.970e-98	97.44	DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp....	[more]
A0A835Z565_9STRA	9.750e-77	81.29	DNA-directed RNA polymerase subunit beta n=1 Tax=T...	[more]
A0A482SPL4_9ARCH	3.080e-76	79.35	DNA-directed RNA polymerase subunit beta n=1 Tax=a...	[more]
A0A7S2WKY6_9STRA	7.000e-75	75.00	DNA-directed RNA polymerase (Fragment) n=2 Tax=Euc...	[more]
A0A2P4YIY6_9STRA	1.950e-74	77.56	DNA-directed RNA polymerase subunit beta (Fragment...	[more]
A0A7S3H3I2_9STRA	2.370e-74	78.06	DNA-directed RNA polymerase subunit beta n=1 Tax=S...	[more]
M4C4J1_HYAAE	2.540e-74	77.56	DNA-directed RNA polymerase n=1 Tax=Hyaloperonospo...	[more]
A0A7S3PBU7_9STRA	3.490e-74	76.35	DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp...	[more]
A0A2G8KFE2_STIJA	4.010e-74	74.34	DNA-directed RNA polymerase n=1 Tax=Stichopus japo...	[more]
A0A822DRV6_9NEOB	5.630e-74	77.03	DNA-directed RNA polymerase n=1 Tax=Ranitomeya imi...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.1100.10		coord: 4..157 e-value: 7.8E-35 score: 122.5
None	No IPR available	PANTHER	PTHR20856:SF8	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2	coord: 3..156
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 4..156
IPR007645	RNA polymerase Rpb2, domain 3	PFAM	PF04565	RNA_pol_Rpb2_3	coord: 98..156 e-value: 1.9E-19 score: 69.6
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 3..156

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig718	contig	M-pyrifera_M_contig718:12482..16183 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig718.17104.1	mRNA_M-pyrifera_M_contig718.17104.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig718 12482..16183 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig718.17104.1 ID=prot_M-pyrifera_M_contig718.17104.1|Name=mRNA_M-pyrifera_M_contig718.17104.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
MTAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVL
SKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVL
SRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESC
GLVKNLG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007645	RNA_pol_Rpb2_3
IPR015712	DNA-dir_RNA_pol_su2