prot_M-pyrifera_M_contig718.17103.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig718.17103.1
Unique Nameprot_M-pyrifera_M_contig718.17103.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length129
Homology
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Match: D7FL54_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL54_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 7.550e-80
Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYTQKQALLYIGTKMRVPPKAGARAMRQQSS 128
            MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEP+IMNAFMASLE++Q+VGV+TQKQALLYIGTKMRVPPKAGARAMRQQSS
Sbjct:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARAMRQQSS 128          
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 3.450e-73
Identity = 124/128 (96.88%), Postives = 128/128 (100.00%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYTQKQALLYIGTKMRVPPKAGARAMRQQSS 128
            MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEP+IMNAFMASLE++Q+VGVYTQKQALLYIGTKMRVPPKAGARAMRQQSS
Sbjct:  236 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVYTQKQALLYIGTKMRVPPKAGARAMRQQSS 363          
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 165 bits (418), Expect = 7.490e-45
Identity = 86/115 (74.78%), Postives = 97/115 (84.35%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYTQKQALLYIGTKMRVP 115
            MQEQLSKNRVIIE D K N+SA I SSTHERKSRC IH+K+GKVY+ HN+LGDDVPIVV ++AMG  SDQEIVQLVGSEP +++AF  S+EEA AVGV TQKQAL YIG KMR P
Sbjct:  212 MQEQLSKNRVIIELDNKGNVSANIQSSTHERKSRCAIHVKHGKVYLHHNTLGDDVPIVVFMKAMGVESDQEIVQLVGSEPHLVDAFGESIEEALAVGVMTQKQALKYIGRKMRNP 326          
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.520e-40
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYTQKQALLYIGTKM 112
            M EQLSKNRVIIE D K N+SAAITSSTH+RKSRCNI  KN K+Y+KHNSLGDD+PIV+IL+AMG   DQEIVQLVG+EPE+++ F  SLEE   +G+++Q QAL +IG ++
Sbjct:   66 MHEQLSKNRVIIELDPKDNVSAAITSSTHDRKSRCNIFFKNNKMYLKHNSLGDDIPIVIILKAMGLECDQEIVQLVGTEPEMLDMFAGSLEEPYNLGIFSQDQALTFIGNRV 177          
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Match: A0A2P4YK15_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK15_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.310e-39
Identity = 74/124 (59.68%), Postives = 90/124 (72.58%), Query Frame = 0
Query:    3 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYTQKQALLYIGTKMRVPPKAGARAMRQQ 126
            EQLSKNR+IIE DGK N+ A+ITSSTHERKSR NI +  G+VY+K NS G D+PIV++ R MG  SDQEIV LVGSE +I +   AS EEA  + V+TQ+QAL YIG+KM    K GA   R +
Sbjct:  186 EQLSKNRIIIEEDGKHNVCASITSSTHERKSRTNIFLNKGRVYLKSNSFGSDIPIVIVFRGMGVESDQEIVSLVGSESDICDVMSASFEEASDLKVFTQQQALEYIGSKMNALTKIGATGGRHR 309          
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Match: A0A1V9Z156_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z156_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.160e-38
Identity = 74/118 (62.71%), Postives = 94/118 (79.66%), Query Frame = 0
Query:    3 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYTQKQALLYIGTKMRVPPKAGA 120
            EQLSKNRVI+E DGK N+ A+ITSSTHERKSR NI +  GK+Y+K NS  DD+PIVV+ R MG TSDQEIV LVG EP++M++F AS+EE+  + ++TQ QAL YI +KM++  KAGA
Sbjct:  208 EQLSKNRVILEEDGKNNVCASITSSTHERKSRTNIFLNKGKIYLKSNSFTDDLPIVVVFRGMGMTSDQEIVSLVGHEPDVMDSFAASIEESSDLKIFTQTQALTYIASKMKI--KAGA 323          
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 145 bits (366), Expect = 7.580e-38
Identity = 74/119 (62.18%), Postives = 91/119 (76.47%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYTQKQALLYIGTKMRVPPKAG 119
            MQEQLSKNRVIIE D K + +A ITSSTHERKSRC+I +K G+VY+KHN+LG+D+PI ++ +AMG  SDQEIVQ+VGSEPE    F  SLEE   + + TQKQAL YIG K+R   + G
Sbjct:  179 MQEQLSKNRVIIEVDSKGHTAATITSSTHERKSRCSIFVKAGRVYLKHNTLGEDMPIAIVFKAMGIESDQEIVQMVGSEPETPAQFALSLEEPVVLQILTQKQALTYIGNKIRANQRPG 297          
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 144 bits (363), Expect = 1.930e-37
Identity = 77/114 (67.54%), Postives = 92/114 (80.70%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNG-KVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYTQKQALLYIGTKMR 113
            MQEQLSKNRVIIE D K N+SA+ITSSTH+RK R NI +KNG KVY+K+N LGDDVPIVV+L+AMG  SDQEIV +VG  PE+++AF  SLEE   +G+ TQ QAL YIG K+R
Sbjct:  204 MQEQLSKNRVIIEEDNKGNVSASITSSTHDRKGRSNIFVKNGTKVYLKNNLLGDDVPIVVVLKAMGMQSDQEIVCMVGDSPEMLDAFAPSLEEPYHLGICTQAQALRYIGAKIR 317          
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO)

HSP 1 Score: 144 bits (362), Expect = 2.650e-37
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 0
Query:    2 QEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYTQKQALLYIGTKMR 113
            QEQLSKNR+I+E D K  +SA++TSSTHERKSR  I  K+G++++KHN++GDDVP+V +LRAMG TSDQEIVQLVGSEPE+ +A   SLEE   +G+ TQ QAL YIG ++R
Sbjct:  468 QEQLSKNRIIVELDPKGAVSASVTSSTHERKSRTVITTKHGRIHLKHNTIGDDVPVVAVLRAMGVTSDQEIVQLVGSEPELQDALAPSLEETLELGILTQAQALEYIGARIR 579          
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Match: K3X1L2_GLOUD (DNA-directed RNA polymerase subunit beta n=32 Tax=Oomycota TaxID=4762 RepID=K3X1L2_GLOUD)

HSP 1 Score: 142 bits (357), Expect = 1.240e-36
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 0
Query:    3 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYTQKQALLYIGTKMRVPPKAGARAMRQQ 126
            EQLSKNRVIIE D K+N+ A+ITSSTHERKSR NI +   +VY+K NS G D+PIV++ R MG  SDQEIV L+GSEP++ +A  AS EEA  + V+TQ QAL YIG+KM    K GA   R +
Sbjct:  196 EQLSKNRVIIEEDAKQNVCASITSSTHERKSRTNIFINKNRVYLKSNSFGSDIPIVIVFRGMGMESDQEIVSLIGSEPDVTDALTASFEEASDLKVFTQLQALEYIGSKMNAVTKVGATGGRHR 319          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig718.17103.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL54_ECTSI7.550e-8096.09DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE3.450e-7396.88DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA7.490e-4574.78DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S3H3I2_9STRA1.520e-4066.96DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A2P4YK15_9STRA5.310e-3959.68DNA-directed RNA polymerase (Fragment) n=2 Tax=Phy... [more]
A0A1V9Z156_9STRA2.160e-3862.71DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S2WH87_9STRA7.580e-3862.18DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
I2CNY0_NANGC1.930e-3767.54DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A5A8CMB6_CAFRO2.650e-3763.39DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
K3X1L2_GLOUD1.240e-3658.87DNA-directed RNA polymerase subunit beta n=32 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10coord: 8..128
e-value: 2.9E-31
score: 110.4
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 7..121
e-value: 1.8E-18
score: 66.9
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..119
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 1..119
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig718contigM-pyrifera_M_contig718:7391..11218 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig718.17103.1mRNA_M-pyrifera_M_contig718.17103.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig718 7391..11218 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig718.17103.1 ID=prot_M-pyrifera_M_contig718.17103.1|Name=mRNA_M-pyrifera_M_contig718.17103.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNS
LGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNAFMASLEEAQAVGVYT
QKQALLYIGTKMRVPPKAGARAMRQQSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037034RNA_pol_Rpb2_2_sf
IPR007642RNA_pol_Rpb2_2
IPR015712DNA-dir_RNA_pol_su2