prot_M-pyrifera_M_contig70838.16908.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig70838.16908.1
Unique Nameprot_M-pyrifera_M_contig70838.16908.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length240
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70838.16908.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 214..230
e-value: 0.0098
score: 23.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 215..229
score: 10.378
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 35..123
e-value: 4.7E-7
score: 30.0
NoneNo IPR availableGENE3D4.10.60.10coord: 185..239
e-value: 5.0E-5
score: 25.1
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 212..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70838contigM-pyrifera_M_contig70838:381..1100 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70838.16908.1mRNA_M-pyrifera_M_contig70838.16908.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig70838 381..1100 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig70838.16908.1 ID=prot_M-pyrifera_M_contig70838.16908.1|Name=mRNA_M-pyrifera_M_contig70838.16908.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=240bp
FRGEEGAAARAWVREVDTFQRGYEWNDGVAGRWAGMQLRGPASAWLAAQP
ATRDTWSELRAAVLREFAPATTQETVIELLCERRQRAGEGHWAYWRALVQ
LSQRADPPLDSSTVYSLFRRGLRATLLEKLKIARTATWAESMALLDTLEA
TGPTTAAVRMVQGEPTPSLATAQEGQIAALTAAVARLSQQVGRPTREPPR
EGRKPRYSKEGAPICFRCGRPGHIRRHCRGEPAAPAPLPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
IPR036875Znf_CCHC_sf