mRNA_M-pyrifera_M_contig70838.16908.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70838.16908.1
Unique NamemRNA_M-pyrifera_M_contig70838.16908.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70838.16908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70838contigM-pyrifera_M_contig70838:381..1100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size720
Cds size720
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.2404246-CDS-M-pyrifera_M_contig70838:380..11001622816602.2404246-CDS-M-pyrifera_M_contig70838:380..1100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70838 381..1100 -
1692278071.2733557-CDS-M-pyrifera_M_contig70838:380..11001692278071.2733557-CDS-M-pyrifera_M_contig70838:380..1100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70838 381..1100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70838.16908.1prot_M-pyrifera_M_contig70838.16908.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70838 381..1100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70838.16908.1

>prot_M-pyrifera_M_contig70838.16908.1 ID=prot_M-pyrifera_M_contig70838.16908.1|Name=mRNA_M-pyrifera_M_contig70838.16908.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=240bp
FRGEEGAAARAWVREVDTFQRGYEWNDGVAGRWAGMQLRGPASAWLAAQP
ATRDTWSELRAAVLREFAPATTQETVIELLCERRQRAGEGHWAYWRALVQ
LSQRADPPLDSSTVYSLFRRGLRATLLEKLKIARTATWAESMALLDTLEA
TGPTTAAVRMVQGEPTPSLATAQEGQIAALTAAVARLSQQVGRPTREPPR
EGRKPRYSKEGAPICFRCGRPGHIRRHCRGEPAAPAPLPP
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mRNA from alignment at M-pyrifera_M_contig70838:381..1100-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70838.16908.1 ID=mRNA_M-pyrifera_M_contig70838.16908.1|Name=mRNA_M-pyrifera_M_contig70838.16908.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig70838:381..1100- (Macrocystis pyrifera P11B4 male)
TTTCGCGGCGAAGAAGGAGCCGCAGCCCGAGCGTGGGTCCGGGAGGTGGA
CACGTTCCAACGCGGATACGAGTGGAACGACGGGGTCGCCGGGAGATGGG
CGGGTATGCAGCTGCGGGGGCCGGCGTCAGCGTGGCTCGCGGCACAGCCA
GCCACGAGGGATACGTGGAGCGAGCTGCGCGCGGCGGTCCTGCGCGAGTT
CGCCCCGGCGACCACCCAAGAGACGGTCATCGAACTGCTATGCGAGCGGC
GACAGAGGGCGGGAGAGGGGCATTGGGCCTACTGGAGAGCGCTGGTACAG
CTGTCGCAGCGGGCGGACCCGCCGCTGGATAGCAGCACCGTATATAGCCT
TTTCCGGCGCGGACTGCGTGCCACTCTACTGGAAAAGCTCAAGATCGCCC
GGACGGCGACATGGGCCGAGAGTATGGCGCTGCTCGACACACTGGAGGCG
ACCGGACCGACGACGGCGGCGGTCAGGATGGTGCAGGGGGAGCCGACGCC
AAGCTTGGCCACTGCGCAGGAGGGGCAGATCGCAGCGTTGACAGCAGCGG
TAGCCCGGCTTTCGCAGCAGGTCGGCCGACCGACACGAGAACCGCCCCGG
GAGGGACGGAAGCCGCGATACTCCAAGGAGGGAGCGCCGATTTGCTTCAG
GTGCGGCCGACCAGGCCACATCCGCCGACACTGCCGAGGAGAACCGGCCG
CACCGGCCCCACTACCGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70838:381..1100-

>mRNA_M-pyrifera_M_contig70838.16908.1 ID=mRNA_M-pyrifera_M_contig70838.16908.1|Name=mRNA_M-pyrifera_M_contig70838.16908.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1440bp|location=Sequence derived from alignment at M-pyrifera_M_contig70838:381..1100- (Macrocystis pyrifera P11B4 male)
TTTCGCGGCGAAGAAGGAGCCGCAGCCCGAGCGTGGGTCCGGGAGGTGGA
CACGTTCCAACGCGGATACGAGTGGAACGACGGGGTCGCCGGGAGATGGG
CGGGTATGCAGCTGCGGGGGCCGGCGTCAGCGTGGCTCGCGGCACAGCCA
GCCACGAGGGATACGTGGAGCGAGCTGCGCGCGGCGGTCCTGCGCGAGTT
CGCCCCGGCGACCACCCAAGAGACGGTCATCGAACTGCTATGCGAGCGGC
GACAGAGGGCGGGAGAGGGGCATTGGGCCTACTGGAGAGCGCTGGTACAG
CTGTCGCAGCGGGCGGACCCGCCGCTGGATAGCAGCACCGTATATAGCCT
TTTCCGGCGCGGACTGCGTGCCACTCTACTGGAAAAGCTCAAGATCGCCC
GGACGGCGACATGGGCCGAGAGTATGGCGCTGCTCGACACACTGGAGGCG
ACCGGACCGACGACGGCGGCGGTCAGGATGGTGCAGGGGGAGCCGACGCC
AAGCTTGGCCACTGCGCAGGAGGGGCAGATCGCAGCGTTGACAGCAGCGG
TAGCCCGGCTTTCGCAGCAGGTCGGCCGACCGACACGAGAACCGCCCCGG
GAGGGACGGAAGCCGCGATACTCCAAGGAGGGAGCGCCGATTTGCTTCAG
GTGCGGCCGACCAGGCCACATCCGCCGACACTGCCGAGGAGAACCGGCCG
CACCGGCCCCACTACCGCCGTTTCGCGGCGAAGAAGGAGCCGCAGCCCGA
GCGTGGGTCCGGGAGGTGGACACGTTCCAACGCGGATACGAGTGGAACGA
CGGGGTCGCCGGGAGATGGGCGGGTATGCAGCTGCGGGGGCCGGCGTCAG
CGTGGCTCGCGGCACAGCCAGCCACGAGGGATACGTGGAGCGAGCTGCGC
GCGGCGGTCCTGCGCGAGTTCGCCCCGGCGACCACCCAAGAGACGGTCAT
CGAACTGCTATGCGAGCGGCGACAGAGGGCGGGAGAGGGGCATTGGGCCT
ACTGGAGAGCGCTGGTACAGCTGTCGCAGCGGGCGGACCCGCCGCTGGAT
AGCAGCACCGTATATAGCCTTTTCCGGCGCGGACTGCGTGCCACTCTACT
GGAAAAGCTCAAGATCGCCCGGACGGCGACATGGGCCGAGAGTATGGCGC
TGCTCGACACACTGGAGGCGACCGGACCGACGACGGCGGCGGTCAGGATG
GTGCAGGGGGAGCCGACGCCAAGCTTGGCCACTGCGCAGGAGGGGCAGAT
CGCAGCGTTGACAGCAGCGGTAGCCCGGCTTTCGCAGCAGGTCGGCCGAC
CGACACGAGAACCGCCCCGGGAGGGACGGAAGCCGCGATACTCCAAGGAG
GGAGCGCCGATTTGCTTCAGGTGCGGCCGACCAGGCCACATCCGCCGACA
CTGCCGAGGAGAACCGGCCGCACCGGCCCCACTACCGCCG
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