prot_M-pyrifera_M_contig68770.16536.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig68770.16536.1
Unique Nameprot_M-pyrifera_M_contig68770.16536.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length202
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A7S4IE78_9EUKA (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IE78_9EUKA)

HSP 1 Score: 127 bits (318), Expect = 1.000e-33
Identity = 78/190 (41.05%), Postives = 106/190 (55.79%), Query Frame = 0 
Query:    9 AGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLR-LRGERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 197
            AGSIDGT E PHD+AL RAS++                                       + ++D+   RG P+ T+FV  +  + +E+ L+   +  G++RR+RLVRDIVTG  +GYAF E+  S+   RA      R + G R++++ +     PGWVPRR GGGLGGRKE+GQLRFGGR RPHRVP
Sbjct:    1 AGSIDGTDEIPHDKALERASNAHY-------------------------------------DPKKDSKI-RGDPKYTIFVGRISYETSEQTLKEEFSRYGEIRRLRLVRDIVTGLSKGYAFIEYEHSSDCRRAHEKMHRRYIDGRRILVDIERERAQPGWVPRRLGGGLGGRKESGQLRFGGRDRPHRVP 152
[Close]
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A7I8W8A0_9ANNE (DgyrCDS12713 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W8A0_9ANNE)

HSP 1 Score: 123 bits (309), Expect = 1.060e-31
Identity = 80/198 (40.40%), Postives = 103/198 (52.02%), Query Frame = 0 
Query:    1 MERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRG-PPLRLRGERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 197
            +++YD V+ GSIDGT E  HD+A++RAS               A+  P                        + TV   G  ++TLFV  L  D  EE L  +    G +R +R+VRDIVTG  + YAF EF  S+    AL+    L L G R+ +E +L   + GWVPRR GGGLGGRKEAGQLRFGG+ RP   P
Sbjct:   12 VDKYDPVMVGSIDGTDEEAHDKAIIRASE--------------AKYKP-----------------------NKGTV---GNAKKTLFVFNLNSDTKEETLTKVFKKHGTLRNVRVVRDIVTGDSKNYAFVEFKHSSDAGNALKHCDGLHLEGNRIKVEQELERTLKGWVPRRLGGGLGGRKEAGQLRFGGKYRPWAKP 169
[Close]
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A670JZA3_PODMU (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=3 Tax=Lacertinae TaxID=162266 RepID=A0A670JZA3_PODMU)

HSP 1 Score: 124 bits (311), Expect = 1.200e-31
Identity = 78/197 (39.59%), Postives = 106/197 (53.81%), Query Frame = 0 
Query:    2 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLRGER-LIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 197
            + YD + AGSIDGT E PHDRA+ RA ++                  ++P + ++ D                       P  TLFVA L    TEE+LR + +  G +RRIRLVRD+VTG  +GYAF EF E  +  +A R     +  +R + ++ +L   + GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct:    9 KEYDPLKAGSIDGTDEEPHDRAVWRAMTAR-----------------YVPNRGVSGD-----------------------PHLTLFVARLNLQTTEEKLREVFSRYGDIRRIRLVRDLVTGFSKGYAFVEFKEERALVKAYRDANKLVIDQREVFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: UPI001AACCB51 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 n=2 Tax=Rana temporaria TaxID=8407 RepID=UPI001AACCB51)

HSP 1 Score: 123 bits (308), Expect = 6.760e-31
Identity = 78/197 (39.59%), Postives = 108/197 (54.82%), Query Frame = 0 
Query:    2 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALR-GPPLRLRGERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 197
            + YD + AGSIDGT E PHDRA++RA                AR   + P K +  D                       P+ TLFVA L  + TEE+L+   +  G ++RIRLVRDI+TG  +GYAF E+ + ++  +A R G  L +    + ++ +L  ++ GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct:   24 KEYDPLKAGSIDGTDEEPHDRAVLRAM--------------LAR---YAPNKGVVGD-----------------------PQLTLFVARLGQETTEEKLKDFFSRYGDIQRIRLVRDIITGFSKGYAFIEYKQESAIKKAYRDGNKLVIDQHEIFVDYELERMLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: UPI000441E70D (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000441E70D)

HSP 1 Score: 122 bits (305), Expect = 1.220e-30
Identity = 76/197 (38.58%), Postives = 107/197 (54.31%), Query Frame = 0 
Query:    2 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLRGER-LIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 197
            + YD + AGSIDGT E PHDRA+ RA S+                  ++P K ++ D                       P  TLFVA L    TE++L+ + +  G++R+IRLVRD+VTG  +GYAF E+ E  +  +A R     +  +R + ++ +L   + GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct:    9 KEYDPLKAGSIDGTDEEPHDRAVWRAMSAR-----------------YVPNKGVSGD-----------------------PHLTLFVARLNLQTTEDKLKEVFSRYGEIRKIRLVRDLVTGFSKGYAFIEYKEERALMKAHRDANKLIIDQREIFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A151NS57_ALLMI (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151NS57_ALLMI)

HSP 1 Score: 119 bits (299), Expect = 1.530e-30
Identity = 78/197 (39.59%), Postives = 105/197 (53.30%), Query Frame = 0 
Query:    2 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPP-LRLRGERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 197
            + YD + AGSIDGT E PHDRA+ RA                AR   ++P K +A D                       P  TLFVA L    TEE+++ + +  G +R+IRLVRD+VTG  +GYAF E+ E  +  +A R    L +    + ++ +L   + GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct:   22 KEYDPLKAGSIDGTDEEPHDRAIWRAM--------------LAR---YVPNKGVAGD-----------------------PHLTLFVARLNLQTTEEKVKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYKEERALLKAHRDANRLVIDQHEIFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: UPI00074FD6F6 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=2 Tax=Gekkota TaxID=8560 RepID=UPI00074FD6F6)

HSP 1 Score: 121 bits (304), Expect = 1.630e-30
Identity = 77/197 (39.09%), Postives = 101/197 (51.27%), Query Frame = 0 
Query:    2 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLRGER-LIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 197
            + YD + AGSIDGT E PHDRA+                                    W  +T R    R  T    G P  TLFVA L    TEE+L+ + +  G +RRIRLVRD +TG  RGYAF E+ +  +  +A R     +  +R + ++ +L   + GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct:    9 KEYDPLKAGSIDGTDEEPHDRAI------------------------------------WRAMTARYVPNRGVT----GDPHLTLFVARLALQTTEEKLKEVFSRYGDIRRIRLVRDFITGFSRGYAFIEYKDERALLKAHRDANKLIVDQREVFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A6J0UE26_9SAUR (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0UE26_9SAUR)

HSP 1 Score: 121 bits (304), Expect = 1.750e-30
Identity = 78/200 (39.00%), Postives = 108/200 (54.00%), Query Frame = 0 
Query:    2 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLRGER-LIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVPRSF 200
            + YD + AGSIDGT E PHDRA+ RA                AR   ++P K ++ D                       P  TLFVA L    TEE+L+ + +  G++R++RLVRD+VTG  +GYAF E+ E  +  +A R     +  +R + ++ +L   + GW+PRR GGG GG+KE+GQLRFGGR RP R P S 
Sbjct:    9 KEYDPLKAGSIDGTDEEPHDRAVRRAM--------------LAR---YVPSKGVSGD-----------------------PHLTLFVARLSLQTTEEKLKDVFSRYGEIRKLRLVRDLVTGFSKGYAFVEYKEERALMKAHRDANRLVIDQREIFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKPISL 168
[Close]
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A6P9CMX8_PANGU (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=5 Tax=Colubroidea TaxID=34989 RepID=A0A6P9CMX8_PANGU)

HSP 1 Score: 121 bits (304), Expect = 1.840e-30
Identity = 77/197 (39.09%), Postives = 106/197 (53.81%), Query Frame = 0 
Query:    2 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLRGER-LIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 197
            + YD + AGSIDGT E PHDRA+ RA S+                  ++P K ++ D                       P  TLFVA L    TEE+L+ + +  G +R+IRLVRD+VTG  +GYAF E+ E  +  +A R     +  +R + ++ +L   + GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct:   14 KEYDPLKAGSIDGTDEEPHDRAVWRAMSAR-----------------YVPNKDVSGD-----------------------PHLTLFVARLNLQTTEEKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYKEERALLKAHRDANKLIIDQREIFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A8D2D6R3_SCIVU (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=3 Tax=Sciurini TaxID=337752 RepID=A0A8D2D6R3_SCIVU)

HSP 1 Score: 120 bits (302), Expect = 2.260e-30
Identity = 83/200 (41.50%), Postives = 104/200 (52.00%), Query Frame = 0 
Query:    2 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPP-LRLRGERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVPRSF 200
            + YD + AGSIDGT E PHDRA+ RA                AR  P         + G T                 G P  TLFVA L     E++LR + +  G +RR+RLVRD+VTG  +GYAF EF E  +  RA R    L +    + ++ +L   + GWVPRR GGGLGG+KE+GQLRFGGR RP R P S 
Sbjct:    9 KEYDPLKAGSIDGTDEDPHDRAVWRAM--------------LARYVP---------NRGVT-----------------GDPLLTLFVARLNLQTKEDKLREVFSRYGDIRRLRLVRDLVTGFSKGYAFVEFREERALLRAYRDADGLLVDQHEIFVDYELERTLRGWVPRRLGGGLGGKKESGQLRFGGRDRPFRKPISL 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IE78_9EUKA1.000e-3341.05U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
A0A7I8W8A0_9ANNE1.060e-3140.40DgyrCDS12713 n=1 Tax=Dimorphilus gyrociliatus TaxI... [more]
A0A670JZA3_PODMU1.200e-3139.59U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
UPI001AACCB516.760e-3139.59U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
UPI000441E70D1.220e-3038.58U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
A0A151NS57_ALLMI1.530e-3039.59U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
UPI00074FD6F61.630e-3039.09U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
A0A6J0UE26_9SAUR1.750e-3039.00U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
A0A6P9CMX8_PANGU1.840e-3039.09U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
A0A8D2D6R3_SCIVU2.260e-3041.50U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 85..157
e-value: 5.0E-15
score: 65.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 86..143
e-value: 8.2E-13
score: 48.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 84..163
score: 15.323
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 74..191
e-value: 4.8E-21
score: 77.2
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 3..199
NoneNo IPR availablePANTHERPTHR13952:SF6U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEINcoord: 3..199
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 78..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68770contigM-pyrifera_M_contig68770:140..745 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68770.16536.1mRNA_M-pyrifera_M_contig68770.16536.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig68770 140..745 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig68770.16536.1 ID=prot_M-pyrifera_M_contig68770.16536.1|Name=mRNA_M-pyrifera_M_contig68770.16536.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
MERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWL
PVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEEL
RGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLR
GERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVPRSF
IP
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf