prot_M-pyrifera_M_contig687.16519.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig687.16519.1
Unique Nameprot_M-pyrifera_M_contig687.16519.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length473
Homology
BLAST of mRNA_M-pyrifera_M_contig687.16519.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.030e-27
Identity = 188/525 (35.81%), Postives = 230/525 (43.81%), Query Frame = 0
Query:    1 VCVAAGDGSLARDVLRWMKIEGFKASEDAYMLAIKACCVVGFGPES------------SPASG---LPAALPDADVGA------AGVGGGVIGDGEGGXXXXXXXXXXXAVATEASRVSAVPTEARSGYR--------GDRDDVSLSSPASSPTVSSSVAAVASTSPSYXXXXXXXXXIGXXXXXXXXXXXAATLDDGVDEQPEKDDEGAEPRHGEEGEKEEGKQEEQE-FQWFVVPGGREHPPSFDEDGNEEG-----------WTGGVGAXXXXXXXGWVAETSA-----ARLGDVTNAGVSR--------APPAETASVSRRRGVDVXXXXXXXVGEGGLVSGGE--GASGGVGRGEERKVEAEARYGIAIEEREEKDSVVGSGNDSGGVNDSGSVSGGXXXXXXXXXXXXDRINPGDSASAGVDLGQGGVDWRRARILLDDMETAEDLPTPPPAGAYEAVLDACVAAGRVGDALEVAQAMAMAGHRPNPGLVSRLTSSHADVLSKEMREMEEAAAAPMDEW 469
            +C AAGDGSLARDVLRWMK+EGF+ASE+AYMLAI+ACC      +S             PA+    LP   P    GA      AGV   +  +GE               A E+ + SA                  GD  D  +++     T  +SV  V   + S                  XXXXX         ++P+       P  GEE   EE K EE+   +W V+PGGR  PP FDEDGNE+            WT G GA   XXXXG V          +R G+VT A  SR        +P +    VSR   V+V      X             G S G GR                  R + D+VV                  XXXXXXXXXXXX                    DW RAR +LDDM  A+ LP PPP  A+ AVL AC +AGRVG+ALE+AQ M  AG  P+  L++RL +SHAD L +E REMEEAAA P +EW
Sbjct:  953 MCAAAGDGSLARDVLRWMKLEGFQASEEAYMLAIEACCNPTVPQDSLAAPQQQSPFTTPPATSRQRLPLRPPAVANGAMSPEDLAGVRRKLFSEGE---------------APESEQHSAAXXXXXXXXXXXXXXRDDGDXGDNGVAAVLRLATADTSVPGVGDPASSVDEDVERGRVAEKVPAAAXXXXXXXXXXSLNPQRPQ-------PPLGEE---EERKAEERPGLEWVVIPGGRASPPEFDEDGNEKNVAPPGTMGGAAWTTG-GATAGXXXXGAVGFGGGDVAPFSREGEVTTAATSRRDGDGGTTSPASARGDVSRAGAVNVLSPLAAXXXXXXXXXXXXRGGRSSGQGR----------------TPRVDPDAVVAXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWERARAILDDMTAADHLP-PPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSIALMTRLMASHADELDRERREMEEAAAEPAEEW 1432          
BLAST of mRNA_M-pyrifera_M_contig687.16519.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.350e-23
Identity = 177/526 (33.65%), Postives = 217/526 (41.25%), Query Frame = 0
Query:    1 VCVAAGDGSLARDVLRWMKIEGFKASEDAYMLAIKACCVVGFGPESSPASG----------------LPAALPDADVGA------AGVGGGVIGDGEGGXXXXXXXXXXXAVATEASRVSAVPTEARSGYR--------GDRDDVSLSSPASSPTVSSSVAAVASTSPSYXXXXXXXXXIGXXXXXXXXXXXAATLDDGVDEQPEKDDEGAEPRHGEEGEKEEGKQEEQEFQWFVVPGGREHPPSFDEDGNEEGWT-------------------GGVGAXXXXXXXGWVAETSAARLGDVTNAGVSR--------APPAETASVSRRRGVDVXXXXXXXVGEGGLVSGGEGASGGVGRGEERKVEAEARYGIAIEEREEKDSVVGSGNDSGGVNDSGSVSGGXXXXXXXXXXXXDRINPGDSASAGVDLGQGGVDWRRARILLDDMETAEDLPTPPPAGAYEAVLDACVAAGRVGDALEVAQAMAMAGHRPNPGLVSRLTSSHADVLSKEMREMEEAAAAPMDEW 469
            +C AAGDGSLARDVLRWMK+EGF+ASE+AYMLAI+ACC     P+ SPA+                 LP   P    GA      AGV   +  +GE               A E+ + SA                  GD    ++  PA++ T    V   AS+             +  XXXXXXXXXX                  AE R               E +W V+PGGR  PP FDEDGNE+  T                   GG GA       G        R G+ T A  SR        +P +  A VSR   V+V                   +S                 G  +  R + D+                    XXXXXXXXXXXX                    DW RAR +LDDM  A+ LP PPP  A+ AVL AC +AGRVG+ALE+AQ M  AG  P+  L++RL +SHAD L +E REMEEAAA P +EW
Sbjct:  695 MCAAAGDGSLARDVLRWMKLEGFQASEEAYMLAIEACCNPAV-PQDSPAAPQQPSSFTTPPATSRQRLPLPPPTFASGATSPEDLAGVRRKLFSEGE---------------APESEQHSAAXXXXXXXXXXXXXXXXXGDDGVAAVLRPATAGTSVPGVGDPASSVDEDVERGRVAEEMPAXXXXXXXXXXXXXXXXXXXXXXXXXXRKAERRP--------------ELEWVVIPGGRVSPPEFDEDGNEKNVTPPGTMGGAAWATGGAKAGPGGSGAVGFGGGDG----APFPREGEATTAAASRRDGDGGTTSPASARADVSRAGAVNVLSPLAAAXXXXXXXXXXGRSS-----------------GQRLTPRVDPDAXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADWERARAILDDMTAADHLP-PPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSISLMTRLIASHADELDRERREMEEAAAEPAEEW 1166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig687.16519.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGC4_9PHAE4.030e-2735.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX74_ECTSI1.350e-2333.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 372..471
e-value: 1.7E-6
score: 29.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 405..436
e-value: 0.0029
score: 15.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..25
score: 5.59
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 401..435
score: 8.692

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig687contigM-pyrifera_M_contig687:572..2176 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig687.16519.1mRNA_M-pyrifera_M_contig687.16519.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig687 572..2176 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig687.16519.1 ID=prot_M-pyrifera_M_contig687.16519.1|Name=mRNA_M-pyrifera_M_contig687.16519.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=473bp
VCVAAGDGSLARDVLRWMKIEGFKASEDAYMLAIKACCVVGFGPESSPAS
GLPAALPDADVGAAGVGGGVIGDGEGGGGAEGGSGGEGAVATEASRVSAV
PTEARSGYRGDRDDVSLSSPASSPTVSSSVAAVASTSPSYSAAATATAAI
GSPTAAATTGSAAATLDDGVDEQPEKDDEGAEPRHGEEGEKEEGKQEEQE
FQWFVVPGGREHPPSFDEDGNEEGWTGGVGAGGGGGSGGWVAETSAARLG
DVTNAGVSRAPPAETASVSRRRGVDVDVDVTVDVGEGGLVSGGEGASGGV
GRGEERKVEAEARYGIAIEEREEKDSVVGSGNDSGGVNDSGSVSGGDSGS
VGIGDSGSDRINPGDSASAGVDLGQGGVDWRRARILLDDMETAEDLPTPP
PAGAYEAVLDACVAAGRVGDALEVAQAMAMAGHRPNPGLVSRLTSSHADV
LSKEMREMEEAAAAPMDEWSRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat