prot_M-pyrifera_M_contig67938.16391.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig67938.16391.1
Unique Nameprot_M-pyrifera_M_contig67938.16391.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length108
Homology
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BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Match: A0A0K0D391_ANGCA (PUM-HD domain-containing protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0D391_ANGCA)

HSP 1 Score: 60.5 bits (145), Expect = 1.920e-8
Identity = 28/107 (26.17%), Postives = 57/107 (53.27%), Query Frame = 0 
Query:    1 RRLLETTLVGVDSMAVHSFGTYVVQHIVIHGTEREREAIVEAAKPVLYAWCAEKYGSAVVERLLEHSKDALRATIASSILEGQEDQRAALLRLCNDKYGNFVVQNLL 107
            R +LE     V S+ +  +G YV+QH++ HG++ +R+ I++     +  +   K+ S V+E+ L  +    +A +   +    +D    +L +  D++ N+VVQ +L
Sbjct:  194 RPVLEALHASVRSLVLDQYGNYVIQHVIEHGSDPDRDRIIQEITGNVLRYAQHKFASNVIEKCLICAGPHHKAVLIDEVCGDNDDPSPPILLMMKDQFANYVVQKML 300
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BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Match: UPI0002C3DED3 (pumilio, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=UPI0002C3DED3)

HSP 1 Score: 59.7 bits (143), Expect = 3.800e-8
Identity = 32/99 (32.32%), Postives = 53/99 (53.54%), Query Frame = 0 
Query:   10 GVDSMAVHSFGTYVVQHIVIHGTEREREAIVEAAKPVLYAWCAEKYGSAVVERLLEHSKDALRATIASSILEGQEDQRAALLRLCNDKYGNFVVQNLLK 108
             V  ++V+ +G YV+QH+V HG   +R AIV+  K  LY +  +KY S VVE+ L   ++  +      +   + D       +C D Y N+VVQ +++
Sbjct:  289 NVWDLSVNQYGNYVIQHLVQHGNNSQRVAIVKNIKGKLYEYAMKKYSSNVVEKCLRCCEEKEQNVFVDELFRMEGDGDKVKEMVC-DAYANYVVQRIVE 386
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BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Match: A0A261CQ66_9PELO (PUM-HD domain-containing protein (Fragment) n=3 Tax=Caenorhabditis TaxID=6237 RepID=A0A261CQ66_9PELO)

HSP 1 Score: 59.7 bits (143), Expect = 4.020e-8
Identity = 30/106 (28.30%), Postives = 55/106 (51.89%), Query Frame = 0 
Query:    3 LLETTLVGVDSMAVHSFGTYVVQHIVIHGTEREREAIVE-AAKPVLYAWCAEKYGSAVVERLLEHSKDALRATIASSILEGQEDQRAALLRLCNDKYGNFVVQNLL 107
            +L+   + +  + +  +G YV+QH++ HG+ +++E IV+      L  +   K+ S V+E+ L    DA R  I   +     D    LL++  D + N+VVQ +L
Sbjct:  528 VLDALNLHLKQLVLDQYGNYVIQHVIEHGSPKDKEQIVQDVINDDLLKYAQHKFASNVIEKCLTFGGDAERNVIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKML 633
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BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Match: A0A7J6MJQ3_PERCH (PUM-HD domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MJQ3_PERCH)

HSP 1 Score: 58.9 bits (141), Expect = 7.300e-8
Identity = 33/110 (30.00%), Postives = 57/110 (51.82%), Query Frame = 0 
Query:   12 DSMAVHSFGTYVVQHIVIHGTEREREAIVEAAKPVLYAWCAEKYGSAVVERLLEHSKDALRATIASSILE-------------GQEDQRAALLRLCNDKYGNFVVQNLLK 108
            + ++ +SFG YV+QH++++GT R+R+AI E       A    K+ + VV++ L+H   +  A + S +L              G   + A LL +  D+YG  +V  LL+
Sbjct:  366 EELSTNSFGNYVIQHVIVYGTPRDRKAIYEYVMEDFAAASCHKFSTNVVDKCLQHLTMSELAHVISVVLGDAGDEAASIAAWGGSAGEAATLLVMLRDRYGCAIVSRLLE 475
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BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Match: A0A7J6MVH5_PEROL (PUM-HD domain-containing protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MVH5_PEROL)

HSP 1 Score: 56.6 bits (135), Expect = 4.750e-7
Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 0 
Query:   14 MAVHSFGTYVVQHIVIHGTEREREAIVEAAKPVLYAWCAEKYGSAVVERLLEHSKDALRATIASSILE-------------GQEDQRAALLRLCNDKYGNFVVQNLLK 108
            ++ +SFG YV+QH++++GT+R+R+AI         A    K+ + VV++ L+H   +  A + S +L              G   + AAL  +  D+YG  +V  LL+
Sbjct:  417 LSTNSFGNYVIQHVIVYGTQRDRKAIYSYVMEDFAAASCHKFSTNVVDKCLQHLSMSELAHVISVVLGDSGDEAASIVAWGGSAGEAAALSVMLRDRYGCAIVSRLLE 524
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BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Match: A0A7J6SAZ5_PEROL (PUM-HD domain-containing protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SAZ5_PEROL)

HSP 1 Score: 56.2 bits (134), Expect = 6.480e-7
Identity = 30/108 (27.78%), Postives = 57/108 (52.78%), Query Frame = 0 
Query:   14 MAVHSFGTYVVQHIVIHGTEREREAIVEAAKPVLYAWCAEKYGSAVVERLLEHSKDALRATIASSILEGQEDQRAALLR-------------LCNDKYGNFVVQNLLK 108
            ++ +SFG YV+QH++++GT+R+R+AI         A    K+ + VV++ L+H   +  A + S +L    D+ A+++              +  D+YG  +V  LL+
Sbjct:  401 LSTNSFGNYVIQHVIVYGTQRDRKAIYSYVMEDFAAASCHKFSTNVVDKCLQHLSMSELAHVISVVLGDSGDEAASIVAWGGTAGEAAALSVMLRDRYGCAIVSRLLE 508
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BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Match: A0A7J6NKV8_PEROL (PUM-HD domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NKV8_PEROL)

HSP 1 Score: 56.2 bits (134), Expect = 6.690e-7
Identity = 30/108 (27.78%), Postives = 57/108 (52.78%), Query Frame = 0 
Query:   14 MAVHSFGTYVVQHIVIHGTEREREAIVEAAKPVLYAWCAEKYGSAVVERLLEHSKDALRATIASSILEGQEDQRAALLR-------------LCNDKYGNFVVQNLLK 108
            ++ +SFG YV+QH++++GT+R+R+AI         A    K+ + VV++ L+H   +  A + S +L    D+ A+++              +  D+YG  +V  LL+
Sbjct:  363 LSTNSFGNYVIQHVIVYGTQRDRKAIYSYVMEDFAAASCHKFSTNVVDKCLQHLSMSELAHVISVVLGDSGDEAASIVAWGGTAGEAAALSVMLRDRYGCAIVSRLLE 470
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BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Match: R1CGL5_EMIHU (PUM-HD domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CGL5_EMIHU)

HSP 1 Score: 55.1 bits (131), Expect = 1.660e-6
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 0 
Query:   10 GVDSMAVHSFGTYVVQHIVIHGTEREREAIVEAAKPVLYAWCAEKYGSAVVERLLE-HSKDALRATIASSILEGQEDQRAALLRLCNDKYGNFVVQNLLK 108
            G++ +A+H F  Y VQ  +      +R+A++ A  P L    A K+GS V E +L   S D L A  A  I  G ++  AAL RL   ++GN+V+Q LL+
Sbjct:  450 GLEELALHRFANYAVQVALRQCGAGQRDAMLGALLPRLLPLSASKHGSNVAEVVLSLASPDQLDAA-AEPIFGGGDEAPAALRRLLQHQFGNYVLQTLLR 548
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BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Match: A0A0D8XF61_DICVI (RNA binding repeat protein, Pumilio-family n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XF61_DICVI)

HSP 1 Score: 54.7 bits (130), Expect = 2.150e-6
Identity = 30/118 (25.42%), Postives = 58/118 (49.15%), Query Frame = 0 
Query:    1 RRLLETTLVGVDSMAVHSFGTYVVQHIVIHGTEREREAIVEAAKPV-----------LYAWCAEKYGSAVVERLLEHSKDALRATIASSILEGQEDQRAALLRLCNDKYGNFVVQNLL 107
            R +LE     ++++ V  +G YVVQH++ HGT ++R+ IV+  +             +  +   K+ S V+E+ L  +    +  +   +     D +  +L +  D+Y N+VVQ +L
Sbjct:  216 RPVLEALHTSMNTLIVDQYGNYVVQHVLEHGTNQDRDRIVQEVRLFDLFLALKVAGNVLRYAQHKFASNVIEKCLICAGGHHKTLLIDEVCGALNDTQPPILLMMKDQYANYVVQKML 333
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BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Match: C5K9E6_PERM5 (Pumilio, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5K9E6_PERM5)

HSP 1 Score: 52.8 bits (125), Expect = 4.270e-6
Identity = 30/108 (27.78%), Postives = 54/108 (50.00%), Query Frame = 0 
Query:   14 MAVHSFGTYVVQHIVIHGTEREREAIVEAAKPVLYAWCAEKYGSAVVERLLEHSKDALRATIASSILE-------------GQEDQRAALLRLCNDKYGNFVVQNLLK 108
            ++ +SFG YV+QH++++GT+ +R+AI       + A    K+ + VV++ L+H      A + S +L              G   +  AL  +  D+YG  +V  LL+
Sbjct:   16 LSTNSFGNYVIQHVIVYGTQADRKAIYSYVMEDITAASCHKFSTNVVDKCLQHLTMVELAHVISVVLGDSGAEAASIAAWGGSAGEAVALSVMLRDRYGCAIVSRLLE 123
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67938.16391.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A0K0D391_ANGCA1.920e-826.17PUM-HD domain-containing protein n=1 Tax=Angiostro... [more]
UPI0002C3DED33.800e-832.32pumilio, putative n=1 Tax=Entamoeba invadens IP1 T... [more]
A0A261CQ66_9PELO4.020e-828.30PUM-HD domain-containing protein (Fragment) n=3 Ta... [more]
A0A7J6MJQ3_PERCH7.300e-830.00PUM-HD domain-containing protein n=1 Tax=Perkinsus... [more]
A0A7J6MVH5_PEROL4.750e-729.63PUM-HD domain-containing protein n=2 Tax=Perkinsus... [more]
A0A7J6SAZ5_PEROL6.480e-727.78PUM-HD domain-containing protein n=3 Tax=Perkinsus... [more]
A0A7J6NKV8_PEROL6.690e-727.78PUM-HD domain-containing protein n=1 Tax=Perkinsus... [more]
R1CGL5_EMIHU1.660e-637.00PUM-HD domain-containing protein n=1 Tax=Emiliania... [more]
A0A0D8XF61_DICVI2.150e-625.42RNA binding repeat protein, Pumilio-family n=1 Tax... [more]
C5K9E6_PERM54.270e-627.78Pumilio, putative n=1 Tax=Perkinsus marinus (strai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 42..77
e-value: 44.0
score: 7.9
coord: 6..41
e-value: 0.021
score: 24.0
IPR001313Pumilio RNA-binding repeatPFAMPF00806PUFcoord: 92..108
e-value: 2.9E-4
score: 20.3
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 85..108
score: 9.247
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 5..41
score: 8.524
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 42..81
score: 7.054
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..108
e-value: 4.3E-25
score: 90.4
NoneNo IPR availablePANTHERPTHR12537:SF12MATERNAL PROTEIN PUMILIOcoord: 3..107
NoneNo IPR availablePANTHERPTHR12537RNA BINDING PROTEIN PUMILIO-RELATEDcoord: 3..107
IPR033133Pumilio homology domainPROSITEPS50303PUM_HDcoord: 1..108
score: 25.495
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 2..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67938contigM-pyrifera_M_contig67938:2..325 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67938.16391.1mRNA_M-pyrifera_M_contig67938.16391.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig67938 2..325 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig67938.16391.1 ID=prot_M-pyrifera_M_contig67938.16391.1|Name=mRNA_M-pyrifera_M_contig67938.16391.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
RRLLETTLVGVDSMAVHSFGTYVVQHIVIHGTEREREAIVEAAKPVLYAW
CAEKYGSAVVERLLEHSKDALRATIASSILEGQEDQRAALLRLCNDKYGN
FVVQNLLK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001313Pumilio_RNA-bd_rpt
IPR011989ARM-like
IPR033133PUM-HD
IPR016024ARM-type_fold