prot_M-pyrifera_M_contig67879.16373.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig67879.16373.1
Unique Name	prot_M-pyrifera_M_contig67879.16373.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	60

Homology

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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: A0A1V0IJK4_9ROSA (Photosystem II reaction center protein K n=75 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1V0IJK4_9ROSA)

HSP 1 Score: 105 bits (263), Expect = 7.000e-29
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 0

Query:    1 MLNIFSLIC--LNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
            MLNIFSLIC  LNSALYSSSFFVAKLPEAYAFLNP+VDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICIYLNSALYSSSFFVAKLPEAYAFLNPLVDVMPVIPLFFFLLAFVWQAAVSFR 61

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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: PSBK_HELAN (Photosystem II reaction center protein K n=1377 Tax=Pentapetalae TaxID=1437201 RepID=PSBK_HELAN)

HSP 1 Score: 105 bits (262), Expect = 9.450e-29
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0

Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
            MLNIFSLICLNSALY SS F AKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICLNSALYPSSLFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59

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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: PSBK_SPIOL (Photosystem II reaction center protein K n=29 Tax=Pentapetalae TaxID=1437201 RepID=PSBK_SPIOL)

HSP 1 Score: 104 bits (259), Expect = 2.710e-28
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0

Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
            MLNIFSLICLNSALYSSSFF  KLPEAYAFL+PIVD MPVIPLFFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICLNSALYSSSFFFGKLPEAYAFLSPIVDFMPVIPLFFFLLAFVWQAAVSFR 59

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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: A0A2P6P1B9_ROSCH (Photosystem II reaction center protein K n=40 Tax=rosids TaxID=71275 RepID=A0A2P6P1B9_ROSCH)

HSP 1 Score: 104 bits (259), Expect = 3.090e-28
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0

Query:    1 MLNIFSLIC--LNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
            MLNI SLIC  LNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:    4 MLNILSLICIYLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 64

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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: PSBK_OENEH (Photosystem II reaction center protein K n=13 Tax=Oenothera TaxID=3939 RepID=PSBK_OENEH)

HSP 1 Score: 103 bits (258), Expect = 3.850e-28
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0

Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
            MLNIFSLICLNS LYSS FF+AKLPEAYAFLNPIVDVMPVIPLFF LLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICLNSDLYSSRFFLAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 59

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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: A0A0U1Y866_9ERIC (Photosystem II reaction center protein K n=76 Tax=Pentapetalae TaxID=1437201 RepID=A0A0U1Y866_9ERIC)

HSP 1 Score: 102 bits (255), Expect = 1.110e-27
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0

Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
            MLNIFSLIC+NS LYSS F  AKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICINSVLYSSHFVFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59

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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: A0A6C0N8B8_9LAMI (Photosystem II reaction center protein K n=1 Tax=Incarvillea arguta TaxID=291310 RepID=A0A6C0N8B8_9LAMI)

HSP 1 Score: 103 bits (256), Expect = 2.280e-27
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0

Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
            MLNI SLIC+NSA YSSSFF  KLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:   40 MLNIVSLICINSAFYSSSFFFGKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 98

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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: UPI001D0FB483 (PsbK n=1 Tax=Impatiens davidii TaxID=253001 RepID=UPI001D0FB483)

HSP 1 Score: 101 bits (252), Expect = 3.180e-27
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0

Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
            MLNI +LIC+NSALY SSFF AKLPE YAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:    1 MLNILNLICINSALYLSSFFFAKLPEVYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59

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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: PSBK_CALFG (Photosystem II reaction center protein K n=324 Tax=Magnoliopsida TaxID=3398 RepID=PSBK_CALFG)

HSP 1 Score: 100 bits (249), Expect = 9.120e-27
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0

Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
            MLNIFSLICLNSAL+SSSFF AKLPEAYAF NPIVDVMPVIP+ FFLLA VWQAAVSFR
Sbjct:    1 MLNIFSLICLNSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59

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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: A0A411K689_9CARY (Photosystem II reaction center protein K n=49 Tax=Pentapetalae TaxID=1437201 RepID=A0A411K689_9CARY)

HSP 1 Score: 100 bits (249), Expect = 9.120e-27
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0

Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
            MLNI SLICLNSALYSSSFF+ KLPEAYAFL+PIVD MPVIPL FFLLAFVWQAAVSFR
Sbjct:    1 MLNILSLICLNSALYSSSFFLVKLPEAYAFLSPIVDFMPVIPLLFFLLAFVWQAAVSFR 59

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1V0IJK4_9ROSA	7.000e-29	95.08	Photosystem II reaction center protein K n=75 Tax=...	[more]
PSBK_HELAN	9.450e-29	94.92	Photosystem II reaction center protein K n=1377 Ta...	[more]
PSBK_SPIOL	2.710e-28	93.22	Photosystem II reaction center protein K n=29 Tax=...	[more]
A0A2P6P1B9_ROSCH	3.090e-28	95.08	Photosystem II reaction center protein K n=40 Tax=...	[more]
PSBK_OENEH	3.850e-28	93.22	Photosystem II reaction center protein K n=13 Tax=...	[more]
A0A0U1Y866_9ERIC	1.110e-27	91.53	Photosystem II reaction center protein K n=76 Tax=...	[more]
A0A6C0N8B8_9LAMI	2.280e-27	91.53	Photosystem II reaction center protein K n=1 Tax=I...	[more]
UPI001D0FB483	3.180e-27	89.83	PsbK n=1 Tax=Impatiens davidii TaxID=253001 RepID=...	[more]
PSBK_CALFG	9.120e-27	89.83	Photosystem II reaction center protein K n=324 Tax...	[more]
A0A411K689_9CARY	9.120e-27	89.83	Photosystem II reaction center protein K n=49 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003687	Photosystem II PsbK	PFAM	PF02533	PsbK	coord: 20..59 e-value: 5.4E-24 score: 84.1
IPR003687	Photosystem II PsbK	PANTHER	PTHR35325	FAMILY NOT NAMED	coord: 1..59
IPR003687	Photosystem II PsbK	HAMAP	MF_00441	PSII_PsbK	coord: 21..59 score: 18.741
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 38..58
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..37
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 59..59
None	No IPR available	PRODOM	PD004458		coord: 21..59 e-value: 9.0E-15 score: 189.0
None	No IPR available	TMHMM	TMhelix		coord: 2..24
None	No IPR available	TMHMM	TMhelix		coord: 34..56
IPR037270	Photosystem II PsbK superfamily	SUPERFAMILY	161037	Photosystem II reaction center protein K, PsbK	coord: 23..59

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig67879	contig	M-pyrifera_M_contig67879:335..514 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig67879.16373.1	mRNA_M-pyrifera_M_contig67879.16373.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig67879 335..514 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig67879.16373.1 ID=prot_M-pyrifera_M_contig67879.16373.1|Name=mRNA_M-pyrifera_M_contig67879.16373.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAF
VWQAAVSFR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003687	PSII_PsbK
IPR037270	PSII_PsbK_sf