prot_M-pyrifera_M_contig67714.16341.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig67714.16341.1
Unique Nameprot_M-pyrifera_M_contig67714.16341.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length290
Homology
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BLAST of mRNA_M-pyrifera_M_contig67714.16341.1 vs. uniprot
Match: G7L107_MEDTR (LRR receptor-like kinase n=2 Tax=Medicago truncatula TaxID=3880 RepID=G7L107_MEDTR)

HSP 1 Score: 56.2 bits (134), Expect = 3.440e-5
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 0 
Query:   11 SFWSIPT-LQHLD-LSYIPLGDTNVSASRI----KAPLQSLRLAHTGVSTALLRSLCSADSPLLPTLRVLDMSFSNLRDEIPDCIGNFSALTE 97
            +F  IPT ++ LD L ++ L + N+++       KA LQSL ++H  +S  +  S+C      L +L  LD+SF+NLRD IP C+GNFS   E
Sbjct:  478 NFVEIPTFIRDLDDLEFLMLSNNNITSLPNWLWKKASLQSLDVSHNSLSGEISPSICD-----LKSLATLDLSFNNLRDNIPSCLGNFSQSLE 565
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67714.16341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
G7L107_MEDTR3.440e-539.78LRR receptor-like kinase n=2 Tax=Medicago truncatu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 95..108
score: 46.01
coord: 116..129
score: 49.34
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 41..130
coord: 109..289
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 4..289
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 140..163
e-value: 0.26
score: 20.4
coord: 92..115
e-value: 140.0
score: 3.8
coord: 116..139
e-value: 59.0
score: 6.9
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 69..129
e-value: 1.4E-8
score: 34.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..290
e-value: 1.8E-39
score: 137.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67714contigM-pyrifera_M_contig67714:369..1238 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67714.16341.1mRNA_M-pyrifera_M_contig67714.16341.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig67714 369..1238 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig67714.16341.1 ID=prot_M-pyrifera_M_contig67714.16341.1|Name=mRNA_M-pyrifera_M_contig67714.16341.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=290bp
RTDLSGPLHDSFWSIPTLQHLDLSYIPLGDTNVSASRIKAPLQSLRLAHT
GVSTALLRSLCSADSPLLPTLRVLDMSFSNLRDEIPDCIGNFSALTELDL
GSNDLEGYVPATISALQQLETVDLSRNKLEGLKDMDVCAMPVLRRLYLGN
NDLRELPKITCASCTGLDLEILDLSSNNLQAPQVASFLPIVGQTQVVSLR
SNILTVLDFDRIYECSPVPEDAALRTLDVSQNRLSALNCVKGPSSHGSYD
FSISTLLASGNDLTSDQAGDCLATGTWPVLQEVDLSSNQL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf