prot_M-pyrifera_M_contig67446.16290.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig67446.16290.1
Unique Nameprot_M-pyrifera_M_contig67446.16290.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length34
Homology
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BLAST of mRNA_M-pyrifera_M_contig67446.16290.1 vs. uniprot
Match: D8LSC3_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 4.800e-9
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 
Query:    1 MRRRLLARRFVKALTQGQSSVRPIEMQAHDPVR 33
            MRR+LL +RFV ALT GQSSVRPIEMQAHDPVR
Sbjct:  268 MRRKLLVQRFVMALTSGQSSVRPIEMQAHDPVR 300
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67446.16290.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSC3_ECTSI4.800e-984.85Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010490Conserved oligomeric Golgi complex subunit 6PFAMPF06419COG6coord: 1..33
e-value: 8.0E-9
score: 34.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67446contigM-pyrifera_M_contig67446:645..746 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67446.16290.1mRNA_M-pyrifera_M_contig67446.16290.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig67446 627..746 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig67446.16290.1 ID=prot_M-pyrifera_M_contig67446.16290.1|Name=mRNA_M-pyrifera_M_contig67446.16290.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=34bp
MRRRLLARRFVKALTQGQSSVRPIEMQAHDPVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010490COG6