prot_M-pyrifera_M_contig66040.16038.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig66040.16038.1
Unique Nameprot_M-pyrifera_M_contig66040.16038.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length166
Homology
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Match: S8CI20_9LAMI (RNA polymerase II transcription factor B subunit 2 n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CI20_9LAMI)

HSP 1 Score: 99.4 bits (246), Expect = 2.300e-21
Identity = 63/157 (40.13%), Postives = 95/157 (60.51%), Query Frame = 0
Query:   11 IVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARITRRSGRRAFARSISAAGIVAFLRSHPHSSAALG---VPENVEDILHMWEQENDRVRVLPDAMVLSEFDSAEEFREVEKLLRD-HGLLRSSNAERQVLVSAPSADTRVAIKEWRKKQQ 163
            I+VE NFR++AY++  LH  ++ LF+ ++Y LPNLV A IT+ S  +AF   I+A  I+ FL+ + H   AL    VPENV D + +WE + +R+ ++P A +  EF S E F    +  RD  GLL  S+ + QV+V A   D    +KE+ +KQ+
Sbjct:  300 ILVETNFRLYAYSSSKLHTEMLRLFSRIEYQLPNLVVATITKESLYKAFQNGITAEQIIMFLQQNAHPRVALRLPCVPENVTDQIRLWESDLNRIEMIP-AHIFDEFPSREVFDSACEYARDIGGLLWESSKKMQVVVKA---DVFTEMKEFLRKQK 452          
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Match: A0A2R6WYY1_MARPO (RNA polymerase II transcription factor B subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WYY1_MARPO)

HSP 1 Score: 94.7 bits (234), Expect = 1.110e-19
Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = 0
Query:   11 IVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARITRRSGRRAFARSISAAGIVAFLRSHPHSSAALG---VPENVEDILHMWEQENDRVRVLPDAMVLSEFDSAEEFREVEKLLRDHGLLRSSNAERQVLV 144
            +VVE NFR++AYTT  L A ++ LF  ++Y LPNLV   +T+ S   AFA  IS+  +++FL  H H  AA     VPE V D + +WE + +RV++ P A +  EF + E F  V+   RD G L       Q LV
Sbjct:  304 VVVETNFRIYAYTTSKLQAEILRLFVRLEYQLPNLVVGSLTKESVSTAFASGISSDEMISFLSKHAHPHAAKKTPVVPETVTDQIRLWENDRNRVQMSP-AYMYKEFPTVETFEAVDNYARDIGALLWDEPSTQRLV 439          
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Match: A0A1S4AV23_TOBAC (RNA polymerase II transcription factor B subunit 2 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4AV23_TOBAC)

HSP 1 Score: 94.0 bits (232), Expect = 1.760e-19
Identity = 58/157 (36.94%), Postives = 93/157 (59.24%), Query Frame = 0
Query:   11 IVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARITRRSGRRAFARSISAAGIVAFLRSHPHSSAAL---GVPENVEDILHMWEQENDRVRVLPDAMVLSEFDSAEEFREVEKLLRDHG-LLRSSNAERQVLVSAPSADTRVAIKEWRKKQQ 163
            IV+E NFR++AY+T  LH  ++ LFA V+Y LPNL+   IT+ S  +AF   I+A  I++FL+ + H   A     VPENV D + +WE + +RV ++P A +  EF S + F       R++G LL   + + +++V A   D    +KE+ ++Q+
Sbjct:  276 IVIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAITKESLYKAFQNGITAEQIISFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMIP-AHLYDEFPSKDVFEAACDFAREYGGLLWEDSKQLRIIVKA---DILTEMKEFLRRQK 428          
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Match: A0A2G9IAI3_9LAMI (RNA polymerase II transcription factor B subunit 2 n=3 Tax=Lamiales TaxID=4143 RepID=A0A2G9IAI3_9LAMI)

HSP 1 Score: 92.4 bits (228), Expect = 7.160e-19
Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 0
Query:   11 IVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARITRRSGRRAFARSISAAGIVAFLRSHPHSSAALG---VPENVEDILHMWEQENDRVRVLPDAMVLSEFDSAEEFREVEKLLRDHGLLRSSNAERQVLVSAPSADTRVAIKEWRKKQQ 163
            +VVE NFR++AY+T  LH  ++ LF+ ++Y LPNL+   IT+ S  +AF   I+A  IV+FL+ + H   A     VPENV D + +WE + +RV + P A +  EF S E F       R++G L   N+++  LV    A+    +KE+ ++Q+
Sbjct:  300 VVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYKAFQNGITAEQIVSFLQQNAHPRVAERIPTVPENVTDQIRLWESDLNRVEMAP-AHLYDEFPSREVFEAACDFAREYGGLLWENSKKMRLVV--KAEIFTQMKEFLRRQK 452          
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Match: A0A6I9U1X3_SESIN (RNA polymerase II transcription factor B subunit 2 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9U1X3_SESIN)

HSP 1 Score: 92.4 bits (228), Expect = 7.160e-19
Identity = 58/156 (37.18%), Postives = 92/156 (58.97%), Query Frame = 0
Query:   11 IVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARITRRSGRRAFARSISAAGIVAFLRSHPHSSAAL---GVPENVEDILHMWEQENDRVRVLPDAMVLSEFDSAEEFREVEKLLRDHGLLRSSNAERQVLVSAPSADTRVAIKEWRKKQQ 163
            +VVE NFR++AY++  LH  ++ LFA V+Y LPNL+   IT+ S  +AF   I+A  I++FL+ + H   A     VPENV D + +WE + +RV + P A  + EF S + F       R++G L   N+++  LV    A+  V +KE+ ++Q+
Sbjct:  300 VVVETNFRMYAYSSSKLHCEILRLFARVEYQLPNLIVGAITKESLYKAFQNGITAEQIISFLQQNAHPRVAERTPSVPENVTDQIRLWEADLNRVEMTP-AHFIDEFPSRDVFDAACDFAREYGGLLWENSKKMRLVV--KAEIFVQLKEFIRRQK 452          
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Match: A0A1J6IYE6_NICAT (RNA polymerase II transcription factor B subunit 2 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IYE6_NICAT)

HSP 1 Score: 92.8 bits (229), Expect = 7.480e-19
Identity = 54/140 (38.57%), Postives = 84/140 (60.00%), Query Frame = 0
Query:   11 IVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARITRRSGRRAFARSISAAGIVAFLRSHPHSSAAL---GVPENVEDILHMWEQENDRVRVLPDAMVLSEFDSAEEFREVEKLLRDHG-LLRSSNAERQVLVSA 146
            IV+E NFR++AY+T  LH  ++ LFA V+Y LPNL+   IT+ S  +AF   I+A  I++FL+ + H   A     VPENV D + +WE + +RV ++P A +  EF S + F       R++G LL   + + +++V A
Sbjct:  402 IVIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAITKESLYKAFQNGITAEQIISFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMMP-AHLYDEFPSRDVFEAACDFAREYGGLLWEDSKQMRIIVKA 540          
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Match: A0A7J9K173_9ROSI (RNA polymerase II transcription factor B subunit 2 n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J9K173_9ROSI)

HSP 1 Score: 88.6 bits (218), Expect = 8.170e-19
Identity = 56/140 (40.00%), Postives = 78/140 (55.71%), Query Frame = 0
Query:   11 IVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARITRRSGRRAFARSISAAGIVAFLRSHPHSSAAL---GVPENVEDILHMWEQENDRVRVLPDAMVLSEFDSAEEFREVEKLLRDH-GLLRSSNAERQVLVSA 146
            +VVE NFR++AY++  LH  ++ LFA V+Y LPNL+   IT+ S   AF   ISA  IV FL+ + H   A     VPENV D + +WE + +RV + P A    EF S + F       R H GLL     + +++V A
Sbjct:   46 VVVETNFRMYAYSSSKLHCEILRLFARVEYQLPNLIVGAITKESLYNAFENGISAEQIVTFLQQNAHPRVAEKLPSVPENVTDQIRLWETDLNRVEMTP-AHFYDEFPSRDVFEAASDFARMHNGLLWEDAKKMRMVVKA 184          
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Match: A0A7C9AEZ8_OPUST (RNA polymerase II transcription factor B subunit 2 n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AEZ8_OPUST)

HSP 1 Score: 91.3 bits (225), Expect = 1.830e-18
Identity = 53/137 (38.69%), Postives = 80/137 (58.39%), Query Frame = 0
Query:   11 IVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARITRRSGRRAFARSISAAGIVAFLRSHPHSSAALGVP---ENVEDILHMWEQENDRVRVLPDAMVLSEFDSAEEFREVEKLLRDHGLLRSSNAERQVLV 144
            +VVE NFR++AY+T  LH  ++ LFA ++Y LPNL+   IT+ S   AF   I+A  I++FL+ + H   A  VP   ENV D + +WE + +RV + P A +  EF S + F       R++G L   +++R  LV
Sbjct:  298 VVVETNFRMYAYSTSKLHCEILRLFARIEYQLPNLIVGAITKESLYNAFDNGITAEQIISFLQQNAHPRVAERVPTVPENVTDQIRLWESDLNRVEMTP-AQLYDEFPSKDLFEAACDFAREYGALLYEDSKRMRLV 433          
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Match: K3YHK5_SETIT (RNA polymerase II transcription factor B subunit 2 n=30 Tax=Panicoideae TaxID=147369 RepID=K3YHK5_SETIT)

HSP 1 Score: 91.3 bits (225), Expect = 1.840e-18
Identity = 52/137 (37.96%), Postives = 81/137 (59.12%), Query Frame = 0
Query:   11 IVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARITRRSGRRAFARSISAAGIVAFLRSHPHSSAALG---VPENVEDILHMWEQENDRVRVLPDAMVLSEFDSAEEFREVEKLLRDHGLLRSSNAERQVLV 144
            +V+E NFR++AY+T  LH  ++ LF+ V+Y LPNL+   IT+ S   AF   I+A  I++FLR + H         VPENV D + +WE + +RV ++P + +  +F S E F +     RDHG L   +++R  L+
Sbjct:  299 VVLETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESIYGAFENGITAEQIISFLRQNAHPRVVDKIPVVPENVTDQIRLWETDRNRVEMIP-SHLYEDFPSKEWFEQCCDHARDHGYLLWEDSKRMRLI 434          
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Match: A0A175YN07_DAUCS (RNA polymerase II transcription factor B subunit 2 n=4 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YN07_DAUCS)

HSP 1 Score: 90.9 bits (224), Expect = 2.280e-18
Identity = 53/144 (36.81%), Postives = 84/144 (58.33%), Query Frame = 0
Query:   11 IVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARITRRSGRRAFARSISAAGIVAFLRSHPHSSAAL---GVPENVEDILHMWEQENDRVRVLPDAMVLSEFDSAEEFREVEKLLRDHG-LLRSSNAERQVLVSAPSAD 150
            +VVE NFR++AYTT  LH  ++ LFA ++Y LPNL+   IT+ +  +AF   I++  I+ FL+ + H   A     VPENV D + +WE + +RV + P + +  EF S + F       R++G LL   + + +V+V A + D
Sbjct:  247 VVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTP-SHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYD 389          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66040.16038.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S8CI20_9LAMI2.300e-2140.13RNA polymerase II transcription factor B subunit 2... [more]
A0A2R6WYY1_MARPO1.110e-1940.88RNA polymerase II transcription factor B subunit 2... [more]
A0A1S4AV23_TOBAC1.760e-1936.94RNA polymerase II transcription factor B subunit 2... [more]
A0A2G9IAI3_9LAMI7.160e-1937.18RNA polymerase II transcription factor B subunit 2... [more]
A0A6I9U1X3_SESIN7.160e-1937.18RNA polymerase II transcription factor B subunit 2... [more]
A0A1J6IYE6_NICAT7.480e-1938.57RNA polymerase II transcription factor B subunit 2... [more]
A0A7J9K173_9ROSI8.170e-1940.00RNA polymerase II transcription factor B subunit 2... [more]
A0A7C9AEZ8_OPUST1.830e-1838.69RNA polymerase II transcription factor B subunit 2... [more]
K3YHK5_SETIT1.840e-1837.96RNA polymerase II transcription factor B subunit 2... [more]
A0A175YN07_DAUCS2.280e-1836.81RNA polymerase II transcription factor B subunit 2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004598Transcription factor TFIIH subunit p52/Tfb2PFAMPF03849Tfb2coord: 10..77
e-value: 2.5E-21
score: 76.0
IPR004598Transcription factor TFIIH subunit p52/Tfb2PANTHERPTHR13152TFIIH, POLYPEPTIDE 4coord: 10..162
NoneNo IPR availableGENE3D3.30.70.2610coord: 86..165
e-value: 4.6E-8
score: 35.1
IPR040662Transcription factor Tfb2, C-terminal domainPFAMPF18307Tfb2_Ccoord: 92..153
e-value: 3.5E-8
score: 33.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66040contigM-pyrifera_M_contig66040:347..844 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66040.16038.1mRNA_M-pyrifera_M_contig66040.16038.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig66040 347..844 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig66040.16038.1 ID=prot_M-pyrifera_M_contig66040.16038.1|Name=mRNA_M-pyrifera_M_contig66040.16038.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
MAAASAAPLGIVVEKNFRVFAYTTHALHARLISLFANVDYALPNLVAARI
TRRSGRRAFARSISAAGIVAFLRSHPHSSAALGVPENVEDILHMWEQEND
RVRVLPDAMVLSEFDSAEEFREVEKLLRDHGLLRSSNAERQVLVSAPSAD
TRVAIKEWRKKQQKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004598TFIIH_p52/Tfb2
IPR040662Tfb2_C