prot_M-pyrifera_M_contig65905.16003.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig65905.16003.1
Unique Nameprot_M-pyrifera_M_contig65905.16003.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length206
Homology
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BLAST of mRNA_M-pyrifera_M_contig65905.16003.1 vs. uniprot
Match: A0A1Z5KY60_ORNMO (Leucine rich domain-containing protein (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5KY60_ORNMO)

HSP 1 Score: 57.0 bits (136), Expect = 1.090e-6
Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 0 
Query:    1 LKGQNLASLPSALWLDPRALRILPSVVSVDVSSNALTALPANVFFSNTYHLQRFIARDNRIGPRLPVDFGFLRNLRIADLARNRLVFLPDGIGELAALEVLDVSSNALRGPDAIPASIGRCVKLRSLKLDNN 132
            L   NL   P  L+L    LR L      DVS N +T LP  ++     H+++    +NRI               + DL+RNR+V +P+ +GEL A E L+++ N +     I  SI  C +L+ L+L+ N
Sbjct:   20 LSNINLREFPKELFLISGVLRTL------DVSDNKITTLPTTIY--KFEHMKQLTMNNNRI--------------YVVDLSRNRIVEVPEQVGELTATE-LNLNQNQI---SLISESIADCPRLKVLRLEEN 125
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BLAST of mRNA_M-pyrifera_M_contig65905.16003.1 vs. uniprot
Match: D7VT00_SPHSI (Leucine Rich Repeat protein n=4 Tax=Sphingobacterium spiritivorum TaxID=258 RepID=D7VT00_SPHSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.580e-5
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 0 
Query:   26 VVSVDVSSNALTALPANVFFSNTYHLQRFIARDNRIGPRLPVDFGFLRNLRIADLARNRLVFLPDGIGELAALEVLDVSSNALRGPDAIPASIGRCVKLRSLKL 129
            + +++  S AL +   +  F++T HL+  +   N  G  LP      + LR+ DL+RN L  +P+GIG+L ALE+L    N      A+P SI +  KL+ L L
Sbjct:   63 ITALNKQSPALDSDILDKIFNHTPHLEELVLHSNLTG--LPEISSPGKKLRVLDLSRNNLDIIPEGIGQLTALEILRCDYN--EHLKALPQSIAQLSKLQLLSL 162
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65905.16003.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Z5KY60_ORNMO1.090e-631.82Leucine rich domain-containing protein (Fragment) ... [more]
D7VT00_SPHSI1.580e-534.62Leucine Rich Repeat protein n=4 Tax=Sphingobacteri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 145..167
e-value: 20.0
score: 10.8
coord: 95..121
e-value: 12.0
score: 12.5
coord: 23..46
e-value: 0.76
score: 18.8
coord: 168..191
e-value: 110.0
score: 4.7
coord: 72..93
e-value: 43.0
score: 8.1
coord: 122..144
e-value: 5.7
score: 15.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 112..206
e-value: 6.3E-23
score: 83.0
coord: 1..111
e-value: 1.9E-17
score: 65.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 73..134
e-value: 2.9E-7
score: 30.1
NoneNo IPR availablePANTHERPTHR45752FAMILY NOT NAMEDcoord: 5..155
coord: 64..198
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 17..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65905contigM-pyrifera_M_contig65905:279..896 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65905.16003.1mRNA_M-pyrifera_M_contig65905.16003.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig65905 279..896 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig65905.16003.1 ID=prot_M-pyrifera_M_contig65905.16003.1|Name=mRNA_M-pyrifera_M_contig65905.16003.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp
LKGQNLASLPSALWLDPRALRILPSVVSVDVSSNALTALPANVFFSNTYH
LQRFIARDNRIGPRLPVDFGFLRNLRIADLARNRLVFLPDGIGELAALEV
LDVSSNALRGPDAIPASIGRCVKLRSLKLDNNRIEALPDALGDCTSLEQL
TLSHNLVARLPDSICRTCRHLTVLDAGWNVIGELPPGIGRLKRLRVLLAP
NNKLLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt