prot_M-pyrifera_M_contig65578.15938.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig65578.15938.1
Unique Nameprot_M-pyrifera_M_contig65578.15938.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length52
Homology
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BLAST of mRNA_M-pyrifera_M_contig65578.15938.1 vs. uniprot
Match: A0A7S2UUK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUK6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.640e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0 
Query:    7 DASKANVRVKDVVRAVNGNPCPSYDSLIAIIGAVGRPVQVEFQRLG 52
            + SKANV   DV+  V GN   +YD ++A+I A+GRPV V FQR G
Sbjct:   43 EGSKANVERGDVIVGVEGNAVSTYDDVLAVIQALGRPVTVNFQRPG 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65578.15938.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2UUK6_9STRA8.640e-652.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041489PDZ domain 6PFAMPF17820PDZ_6coord: 1..50
e-value: 8.9E-8
score: 31.9
NoneNo IPR availableGENE3D2.30.42.10coord: 1..52
e-value: 4.2E-8
score: 35.0
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 2..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65578contigM-pyrifera_M_contig65578:277..432 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65578.15938.1mRNA_M-pyrifera_M_contig65578.15938.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig65578 277..432 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig65578.15938.1 ID=prot_M-pyrifera_M_contig65578.15938.1|Name=mRNA_M-pyrifera_M_contig65578.15938.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
AVKAGGDASKANVRVKDVVRAVNGNPCPSYDSLIAIIGAVGRPVQVEFQR
LG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041489PDZ_6
IPR036034PDZ_sf