prot_M-pyrifera_M_contig6494.15831.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig6494.15831.1
Unique Nameprot_M-pyrifera_M_contig6494.15831.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length276
Homology
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BLAST of mRNA_M-pyrifera_M_contig6494.15831.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 9.140e-91
Identity = 170/277 (61.37%), Postives = 196/277 (70.76%), Query Frame = 0 
Query:    6 EFAAT--TPMKPSQGEAMSHPITELEAPRAVLVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTHEESKSQRAALVFVEEEGANAALQANGRDILGANCTVSLASSKPSLNEGLGRENVSDDPSAEAGGRDDRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSQKAKALASKVHE----LDEKHDVSGKFVAAAMTAHAKAVEVDTXXXXXXXXXXXXXXXXXXXXXALESNPRVAAGVNQAGDALNKIVTGVSGFAQQAMGQQHPEELPGPRPANP 276
            EFAA   TPMKPS+G+ + HP+T+LEA R++LVQGLPLLDQELTESSIVQVFSAYGEISKLLLQT+EES++QRA LVF +  GA +ALQANGRDILGANC+VSLASS P+LN+GL R+NVSD P+A  GG + RTLTTAEWIKGIFAQGMVYTRLFDEKLGVS  AK++A+KV                                 XXXXX                ALESNPRVAAGV+QAGDA+  +V  VSG A QAMGQ  P+E+ GP P  P
Sbjct:    3 EFAAVPGTPMKPSKGQDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAA-VGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQ--PQEMAGPVPPVP 276
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BLAST of mRNA_M-pyrifera_M_contig6494.15831.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.010e-26
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 0 
Query:   25 ITELEAPRAVLVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTHEESKSQRAALVFVEEEGANAALQANGRDILGANCTVSLASSKPSLNEGLGRENV---SDDPSAEAGGRDDRTLTTAEWIKGIF 149
            +TE +A R+VLVQGLP+LD++ TE S+V+VFS YG +S+LLLQT   S++QRA +VF E  GA AALQ N RDILGA+C+V L+S+    NE   R N+    +  SA +GG    T TTAEWI+ IF
Sbjct:  447 VTEEQAARSVLVQGLPILDRQRTECSLVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLAGSNERFDRYNIHWMGESESALSGG----TPTTAEWIQLIF 570
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BLAST of mRNA_M-pyrifera_M_contig6494.15831.1 vs. uniprot
Match: A0A7S3Y4B4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4B4_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 2.660e-6
Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 0 
Query:   26 TELEAPRAVLVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTHEESKSQRAALVFVEEEGANAA 90
            +E EA RAVLV G+P +    +E +I+  F+ YG IS+L+ QT E  ++QRA +++ E++G +AA
Sbjct:   21 SEAEASRAVLVSGIPNVKGSGSEDAIMTRFAQYGTISRLIFQTEESGETQRAVVIYAEDQGPSAA 85
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6494.15831.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI9.140e-9161.37RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JE69_9PHAE2.010e-2653.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A7S3Y4B4_HETAK2.660e-643.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 33..106
e-value: 3.3E-4
score: 30.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 42..102
e-value: 2.9E-6
score: 27.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 32..110
score: 10.855
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 6..122
e-value: 9.3E-9
score: 37.3
NoneNo IPR availablePANTHERPTHR32343:SF10SI:CH211-195B21.5coord: 47..264
NoneNo IPR availablePANTHERPTHR32343FAMILY NOT NAMEDcoord: 47..264
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 14..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6494contigM-pyrifera_M_contig6494:942..9554 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6494.15831.1mRNA_M-pyrifera_M_contig6494.15831.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig6494 942..9554 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig6494.15831.1 ID=prot_M-pyrifera_M_contig6494.15831.1|Name=mRNA_M-pyrifera_M_contig6494.15831.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=276bp
MRSPSEFAATTPMKPSQGEAMSHPITELEAPRAVLVQGLPLLDQELTESS
IVQVFSAYGEISKLLLQTHEESKSQRAALVFVEEEGANAALQANGRDILG
ANCTVSLASSKPSLNEGLGRENVSDDPSAEAGGRDDRTLTTAEWIKGIFA
QGMVYTRLFDEKLGVSQKAKALASKVHELDEKHDVSGKFVAAAMTAHAKA
VEVDTKLGVSEAATRWAQKTKESTDKALESNPRVAAGVNQAGDALNKIVT
GVSGFAQQAMGQQHPEELPGPRPANP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf