prot_M-pyrifera_M_contig13575.6001.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig13575.6001.1
Unique Nameprot_M-pyrifera_M_contig13575.6001.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length399
Homology
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Match: A0A6H5JWJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ8_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 7.240e-47
Identity = 196/486 (40.33%), Postives = 231/486 (47.53%), Query Frame = 0
Query:    8 GGRAGRGSLLVQTPVRVVSLSEQRVIQVSCGARHTLAVTLDGRLFAWGDNRYGQCGLPRPPSGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRTVLHPT--LMTENGEGLPLRVLQVACGRQHSLALVRPRQLDNAGASSPEAA------------------------------NLVYSWGRAGGGRLGRLTVASSATTP----APSIISP-----------RGDGGGXXXXXXXXS------------------------WXXXXXXWASGRRGGKGVGGSSRSS-GEHRGGGREQPWDQG---RFWPSAS-----DAFDGPAPVPNDWSYRVNDHRRQGAPLVPIDLSHPATPSSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRS--------------RGPVSIAAGWRHSIAVTEEGAVFAWGCGAGGRLGLGSHADARTPKQV 399
            G  A  GS  ++ PVRV +LS   V+QVSCGA+HTL +T +G LFAWGDNRYGQCGLP P     G                                                      GG TV  PT  L+ + G+ LPLRVLQVA GRQHSLA+   R  D A    P+++                              N++YSWG AG GRLGRL   + +++P    +PS+ SP           + D           S                         XXXXXX       G+G     RS  GE       +P  QG   R  P+       +AF+ PAPV  DW+YRVNDHRR GAPLV +            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+                RGPV+IAAGWRHS+AVTEEGAVFAWGCG+ GRLGLGSH DA  P+QV
Sbjct:  518 GAEAAGGSFWLKAPVRVAALSADTVVQVSCGAKHTLVITSEGHLFAWGDNRYGQCGLPWPSLSSPGDSPRGDGDGQFGLKTFGQMAKKMSTKKFFGGADKAGDGSDGGKGSGDSG-----GGMTVFRPTRVLLWQEGDDLPLRVLQVASGRQHSLAIACSRSTDKA--CVPDSSXXXXXXXXXXXXXXXXXXXXXXVVHVNRRENVLYSWGAAGSGRLGRLPPRNPSSSPFASSSPSLTSPSMRQPPPPHRSKSDSLAGLLPSAKGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGEGXXXXPRSGDGELP---PPEPGQQGSAPRATPAPPXXRPPEAFNMPAPVAADWTYRVNDHRRHGAPLVAVPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAGDTEGMSVLEPGDGVGRGPVAIAAGWRHSVAVTEEGAVFAWGCGSDGRLGLGSHVDAGAPRQV 993          
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 4.840e-46
Identity = 197/509 (38.70%), Postives = 228/509 (44.79%), Query Frame = 0
Query:    4 GDGGGGRAGR-----GS-LLVQTPVRVVSLSEQRVIQVSCGARHTLAVTLDGRLFAWGDNRYGQCGLP---------RPPSGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRTVLHPTL--MTENGEGLPLRVLQVACGRQHSLALVRPRQLDNAGASSPEA---------------------------ANLVYSWGRAGGGRLGRLTVASSATTP---APSIISPRGDGGGXXXXXXXXSWXXXXXXWASG--------------------------------------------RRGGKGVGGSSRSSGEHRGGGREQPWDQG---RFWPSAS-----DAFDGPAPVPNDWSYRVNDHRRQGAPLVPIDLSHPATPSSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASR--------------SRGPVSIAAGWRHSIAVTEEGAVFAWGCGAGGRLGLGSHADARTPKQV 399
            G GGGG AG      GS   ++ PVRV +LS   V+QVSCGA+HTL +T +G LFAWGDNRYGQCGLP          P   G G                                                      GG TV  PTL  + + G+ LPLRVLQVA GRQHSLA+   R  D A      A                           AN++YSWG  G GRLGRL   + +++P   +PS+ SP              S         S                                             R GG+G  G     GE       +P  QG   R  P+       +AF+ PAPV  DW+YRVNDHRR GAPLV +            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+                RGPV+IAAGWRHS+AVTEEGAVFAWGCG+ GRLGLGSH DA  P+QV
Sbjct:  831 GSGGGGAAGTRADAAGSPFWLKAPVRVAALSADHVVQVSCGAKHTLVITSEGHLFAWGDNRYGQCGLPWHSLSSPADSPRGDGDGQFGLKTFGQMAKKMSTKKFPGGADKAGDGSDGGKGNGDSG--------------GGMTVFRPTLVLLRQEGDDLPLRVLQVASGRQHSLAIACSRSNDKACVPDNSAXXXXXXXXXXXXXXXXXXXXSARVNHRANVLYSWGATGSGRLGRLPRRNPSSSPFASSPSLTSPSPRQPPPPHRSKSDSLAGVLPSAKSSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLLGERREREGGRG--GPRSGDGELP---APEPGQQGSAPRATPTPXXXRPPEAFNMPAPVAADWTYRVNDHRRHGAPLVAVPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAGVTEGMTVLEPGDGVGRGPVAIAAGWRHSVAVTEEGAVFAWGCGSEGRLGLGSHVDANAPRQV 1320          
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Match: A0A7S3Y2W4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2W4_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 5.630e-10
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0
Query:  353 RGPVSIAAGWRHSIAVTEEGAVFAWGCGAGGRLGLGSHADARTPKQV 399
            +G   +AAGW HS+AVT EGAVFAWGCG  GRLGLG+H DA  P+Q+
Sbjct:   24 KGVAFVAAGWAHSVAVTAEGAVFAWGCGEHGRLGLGAHRDAAFPEQL 70          
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Match: A0A0J7KHX3_LASNI (Rcc1 and btb domain-containing protein 1 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KHX3_LASNI)

HSP 1 Score: 66.6 bits (161), Expect = 3.800e-8
Identity = 24/49 (48.98%), Postives = 40/49 (81.63%), Query Frame = 0
Query:   15 SLLVQTPVRVVSLSEQRVIQVSCGARHTLAVTLDGRLFAWGDNRYGQCG 63
            +++  TP RV  LSE+R++ ++CG+ H+LA+T DG+++AWG+N+YGQ G
Sbjct:  161 AVVTSTPTRVACLSEERIVDIACGSDHSLALTSDGKVYAWGENKYGQIG 209          
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Match: A0A444SUE8_ARMVU (Putative E3 ubiquitin-protein ligase HERC4 n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444SUE8_ARMVU)

HSP 1 Score: 61.6 bits (148), Expect = 3.270e-7
Identity = 24/49 (48.98%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   17 LVQTPVRVVSLSEQRVIQVSCGARHTLAVTLDGRLFAWGDNRYGQCGLP 65
            +++TP  + +L+ ++VIQ+SCGA H+LA+TLD  ++AWG N +GQ G P
Sbjct:   99 IIETPKLIKTLATKQVIQISCGANHSLALTLDNEVYAWGLNNHGQLGFP 147          
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Match: H3ASL0_LATCH (HECT domain-containing protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3ASL0_LATCH)

HSP 1 Score: 62.0 bits (149), Expect = 1.260e-6
Identity = 24/49 (48.98%), Postives = 37/49 (75.51%), Query Frame = 0
Query:   18 VQTPVRVVSLSEQRVIQVSCGARHTLAVTLDGRLFAWGDNRYGQCGLPR 66
            ++ P  +  L+E +V+QV+CG+RH +A+T DG+LF WG+N YGQ GL +
Sbjct:  124 IKVPRLIKKLNEHKVVQVTCGSRHCIALTKDGQLFTWGENTYGQLGLDK 172          
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Match: A0A5N5T785_9CRUS (Putative E3 ubiquitin-protein ligase HERC4 n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5T785_9CRUS)

HSP 1 Score: 61.6 bits (148), Expect = 1.650e-6
Identity = 24/49 (48.98%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   17 LVQTPVRVVSLSEQRVIQVSCGARHTLAVTLDGRLFAWGDNRYGQCGLP 65
            +++TP  + +L+ ++VIQ+SCGA H+LA+TLD  ++AWG N +GQ G P
Sbjct:  133 IIETPKLIKTLATKQVIQISCGANHSLALTLDNEVYAWGLNNHGQLGFP 181          
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Match: A0A0J7KIF2_LASNI (Rcc1 and btb domain-containing protein 1 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KIF2_LASNI)

HSP 1 Score: 60.8 bits (146), Expect = 1.710e-6
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 0
Query:   16 LLVQTPVRVVSLSEQRVIQVSCGARHTLAVTLDGRLFAWGDNRYGQCG 63
            +   TP RV  LSE+R++ ++CG+ H LA+T DGR++AWG N+ GQ G
Sbjct:   96 MRASTPTRVADLSEKRIVDIACGSDHFLALTSDGRVYAWGKNKSGQIG 143          
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Match: UPI0015D09B7C (probable E3 ubiquitin-protein ligase HERC4 isoform X3 n=2 Tax=Characiphysae TaxID=186628 RepID=UPI0015D09B7C)

HSP 1 Score: 60.1 bits (144), Expect = 2.600e-6
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 0
Query:   18 VQTPVRVVSLSEQRVIQVSCGARHTLAVTLDGRLFAWGDNRYGQCGLPRPPSG 70
            ++ P  V  LSE  ++QV+CG RH+LA++  G++F+WG NRYGQ GL +  +G
Sbjct:  125 IRVPRTVKCLSEAHIVQVTCGYRHSLALSRKGQIFSWGQNRYGQLGLGKEGNG 177          
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Match: A0A485KTE0_9STRA (Aste57867_11400 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTE0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.930e-6
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 0
Query:   12 GRGSLLVQTPVRVVSLSEQRVIQVSCGARHTLAVTLDGRLFAWGDNRYGQCGLPRP 67
            G G +    P  + +L  + V++V+ GA HTLA+ +DG +F WG+N YGQCG+P P
Sbjct:  180 GMGKIRQSLPTMLDALRGKHVVEVAAGAMHTLALLVDGDVFTWGNNSYGQCGVPEP 235          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13575.6001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWJ8_9PHAE7.240e-4740.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN1_ECTSI4.840e-4638.70Similar to hect domain and RLD 4 n=1 Tax=Ectocarpu... [more]
A0A7S3Y2W4_HETAK5.630e-1065.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0J7KHX3_LASNI3.800e-848.98Rcc1 and btb domain-containing protein 1 n=1 Tax=L... [more]
A0A444SUE8_ARMVU3.270e-748.98Putative E3 ubiquitin-protein ligase HERC4 n=1 Tax... [more]
H3ASL0_LATCH1.260e-648.98HECT domain-containing protein n=2 Tax=Latimeria c... [more]
A0A5N5T785_9CRUS1.650e-648.98Putative E3 ubiquitin-protein ligase HERC4 n=1 Tax... [more]
A0A0J7KIF2_LASNI1.710e-650.00Rcc1 and btb domain-containing protein 1 n=1 Tax=L... [more]
UPI0015D09B7C2.600e-647.17probable E3 ubiquitin-protein ligase HERC4 isoform... [more]
A0A485KTE0_9STRA2.930e-644.64Aste57867_11400 protein n=1 Tax=Aphanomyces stella... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 182..196
score: 43.33
coord: 51..67
score: 24.51
coord: 367..388
score: 49.24
coord: 32..45
score: 33.33
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 358..368
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 35..45
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 152..162
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 108..165
score: 9.66
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 372..399
score: 11.308
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 1..48
score: 10.745
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 107..215
e-value: 8.4E-6
score: 26.6
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 327..399
e-value: 1.5E-13
score: 52.3
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 2..72
e-value: 2.7E-16
score: 61.4
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 16..399
NoneNo IPR availablePFAMPF13540RCC1_2coord: 356..380
e-value: 1.2E-7
score: 31.4
coord: 32..61
e-value: 5.1E-12
score: 45.2
NoneNo IPR availablePANTHERPTHR22870:SF360ULTRAVIOLET-B RECEPTOR UVR8coord: 4..64
NoneNo IPR availablePANTHERPTHR22870:SF360ULTRAVIOLET-B RECEPTOR UVR8coord: 355..398
NoneNo IPR availablePANTHERPTHR22870REGULATOR OF CHROMOSOME CONDENSATIONcoord: 355..398
coord: 4..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13575contigM-pyrifera_M_contig13575:2443..7911 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13575.6001.1mRNA_M-pyrifera_M_contig13575.6001.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig13575 2443..7911 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig13575.6001.1 ID=prot_M-pyrifera_M_contig13575.6001.1|Name=mRNA_M-pyrifera_M_contig13575.6001.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=399bp
GGGGDGGGGRAGRGSLLVQTPVRVVSLSEQRVIQVSCGARHTLAVTLDGR
LFAWGDNRYGQCGLPRPPSGGSGGGDGGSFGGGGSGGGKQFGKSFGKSFG
KSFGEISGGVGSSGGGGGGGGGGGRDGGGRTVLHPTLMTENGEGLPLRVL
QVACGRQHSLALVRPRQLDNAGASSPEAANLVYSWGRAGGGRLGRLTVAS
SATTPAPSIISPRGDGGGDGGGGGGGSWGSGGGGWASGRRGGKGVGGSSR
SSGEHRGGGREQPWDQGRFWPSASDAFDGPAPVPNDWSYRVNDHRRQGAP
LVPIDLSHPATPSSSPSSPPPPCPPTILTSSPTTTPSVCVASSSSTAAAS
RSRGPVSIAAGWRHSIAVTEEGAVFAWGCGAGGRLGLGSHADARTPKQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II