prot_M-pyrifera_M_contig13510.5979.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig13510.5979.1
Unique Nameprot_M-pyrifera_M_contig13510.5979.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length53
Homology
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: B8C3F5_THAPS (Dna-directed RNA polymerase i (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C3F5_THAPS)

HSP 1 Score: 97.8 bits (242), Expect = 1.240e-25
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 52
            MNAPVMVD+E ETDPLKIA KELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:   25 MNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLPDGSHEDWGIDELIVD 76          
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A7R9ZBL4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBL4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.150e-25
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 52
            MNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDWSI+ELI+D
Sbjct:  108 MNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 159          
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A6U0JRN7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JRN7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.720e-25
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 52
            MNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDWSI+ELI+D
Sbjct:  147 MNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 198          
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A7S2E4M0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4M0_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 8.880e-25
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 52
            MNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:  109 MNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWKIDELIVD 160          
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: K3WS78_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WS78_GLOUD)

HSP 1 Score: 96.7 bits (239), Expect = 1.740e-24
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 52
            MNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDWSI+ELI++
Sbjct:   82 MNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWSIDELIIE 133          
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A8K1FM68_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM68_PYTOL)

HSP 1 Score: 96.7 bits (239), Expect = 1.740e-24
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 52
            MNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDWSI+ELI++
Sbjct:   82 MNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWSIDELIIE 133          
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A7S0CAC4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAC4_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.750e-24
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 52
            MNAPVMVD++ ETDPL IAMKELRERKIPI IRRY+PDGSHEDWSI+ELI+D
Sbjct:   99 MNAPVMVDLDGETDPLMIAMKELRERKIPIIIRRYMPDGSHEDWSIDELIVD 150          
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A024TCI1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TCI1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.590e-24
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 52
            MNAPVMVDIE ETDPLKIAMKEL ERKIPI IRRYLPDGS+EDWSI+ELI++
Sbjct:   79 MNAPVMVDIEGETDPLKIAMKELAERKIPIIIRRYLPDGSYEDWSIDELIIE 130          
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A6U3VZ54_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VZ54_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.160e-24
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 52
            MNAPVMVD++ ETDPLKIAM+ELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:  145 MNAPVMVDLDGETDPLKIAMRELRERKIPIIIRRYLPDGSHEDWKIDELIVD 196          
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A8J9TPH9_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TPH9_PHATR)

HSP 1 Score: 95.1 bits (235), Expect = 6.330e-24
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 52
            MNAPVMVD++ ETDPL+IA KELRERKIPI IRRYLPDGSHEDWS++EL++D
Sbjct:   78 MNAPVMVDLDGETDPLRIAEKELRERKIPIIIRRYLPDGSHEDWSVDELVVD 129          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8C3F5_THAPS1.240e-2586.54Dna-directed RNA polymerase i (Fragment) n=2 Tax=B... [more]
A0A7R9ZBL4_9STRA2.150e-2588.46Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U0JRN7_9STRA5.720e-2588.46Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2E4M0_9STRA8.880e-2586.54Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K3WS78_GLOUD1.740e-2488.46Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A8K1FM68_PYTOL1.740e-2488.46Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0CAC4_9STRA2.750e-2484.62Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A024TCI1_9STRA4.590e-2486.54Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A6U3VZ54_9STRA6.160e-2484.62Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A8J9TPH9_PHATR6.330e-2480.77Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012293RNA polymerase subunit, RPB6/omegaGENE3D3.90.940.10coord: 1..52
e-value: 1.5E-24
score: 88.3
IPR006111Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..52
e-value: 8.2E-25
score: 85.4
NoneNo IPR availablePANTHERPTHR47227FAMILY NOT NAMEDcoord: 1..51
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 1..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13510contigM-pyrifera_M_contig13510:2279..2437 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13510.5979.1mRNA_M-pyrifera_M_contig13510.5979.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig13510 2276..2437 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig13510.5979.1 ID=prot_M-pyrifera_M_contig13510.5979.1|Name=mRNA_M-pyrifera_M_contig13510.5979.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELI
MD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012293RNAP_RPB6_omega
IPR006111RpoK/Rpb6
IPR036161RPB6/omega-like_sf