mRNA_M-pyrifera_M_contig13510.5979.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13510.5979.1
Unique NamemRNA_M-pyrifera_M_contig13510.5979.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: B8C3F5_THAPS (Dna-directed RNA polymerase i (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C3F5_THAPS)

HSP 1 Score: 99.4 bits (246), Expect = 3.190e-26
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 SMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 159
            SMNAPVMVD+E ETDPLKIA KELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:   24 SMNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLPDGSHEDWGIDELIVD 76
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BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A7R9ZBL4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBL4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.550e-26
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 SMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 159
            SMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDWSI+ELI+D
Sbjct:  107 SMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 159
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BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A6U0JRN7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JRN7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.490e-25
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 SMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 159
            SMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDWSI+ELI+D
Sbjct:  146 SMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 198
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BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A7S2E4M0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4M0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.300e-25
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 SMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 159
            SMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:  108 SMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWKIDELIVD 160
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BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: K3WS78_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WS78_GLOUD)

HSP 1 Score: 98.2 bits (243), Expect = 4.500e-25
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 SMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 159
            SMNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDWSI+ELI++
Sbjct:   81 SMNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWSIDELIIE 133
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BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A8K1FM68_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM68_PYTOL)

HSP 1 Score: 98.2 bits (243), Expect = 4.500e-25
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 SMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 159
            SMNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDWSI+ELI++
Sbjct:   81 SMNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWSIDELIIE 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A7S0CAC4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAC4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.120e-25
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 SMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 159
            SMNAPVMVD++ ETDPL IAMKELRERKIPI IRRY+PDGSHEDWSI+ELI+D
Sbjct:   98 SMNAPVMVDLDGETDPLMIAMKELRERKIPIIIRRYMPDGSHEDWSIDELIVD 150
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BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A024TCI1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TCI1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.180e-24
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 SMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 159
            SMNAPVMVDIE ETDPLKIAMKEL ERKIPI IRRYLPDGS+EDWSI+ELI++
Sbjct:   78 SMNAPVMVDIEGETDPLKIAMKELAERKIPIIIRRYLPDGSYEDWSIDELIIE 130
[Close]
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A6U3VZ54_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VZ54_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.610e-24
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 SMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 159
            SMNAPVMVD++ ETDPLKIAM+ELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:  144 SMNAPVMVDLDGETDPLKIAMRELRERKIPIIIRRYLPDGSHEDWKIDELIVD 196
[Close]
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Match: A0A8J9TPH9_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TPH9_PHATR)

HSP 1 Score: 96.7 bits (239), Expect = 1.630e-24
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 SMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELIMD 159
            SMNAPVMVD++ ETDPL+IA KELRERKIPI IRRYLPDGSHEDWS++EL++D
Sbjct:   77 SMNAPVMVDLDGETDPLRIAEKELRERKIPIIIRRYLPDGSHEDWSVDELVVD 129
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13510.5979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8C3F5_THAPS3.190e-2686.79Dna-directed RNA polymerase i (Fragment) n=2 Tax=B... [more]
A0A7R9ZBL4_9STRA5.550e-2688.68Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U0JRN7_9STRA1.490e-2588.68Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2E4M0_9STRA2.300e-2586.79Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K3WS78_GLOUD4.500e-2588.68Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A8K1FM68_PYTOL4.500e-2588.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0CAC4_9STRA7.120e-2584.91Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A024TCI1_9STRA1.180e-2486.79Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A6U3VZ54_9STRA1.610e-2484.91Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A8J9TPH9_PHATR1.630e-2481.13Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13510contigM-pyrifera_M_contig13510:2276..2437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog35128.Thaps262598
Preferred namepolr2f
KEGG rclassRC02795
KEGG koko:K00960,ko:K03014
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0001650,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.RNA polymerase Rpb6
EggNOG OGs2XDIN@2836,COG1758@1,KOG3405@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size162
Cds size159
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.707978-UTR-M-pyrifera_M_contig13510:2275..22781622815818.707978-UTR-M-pyrifera_M_contig13510:2275..2278Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13510 2276..2278 +
1692277586.6301622-UTR-M-pyrifera_M_contig13510:2275..22781692277586.6301622-UTR-M-pyrifera_M_contig13510:2275..2278Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13510 2276..2278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.7209244-CDS-M-pyrifera_M_contig13510:2278..24371622815818.7209244-CDS-M-pyrifera_M_contig13510:2278..2437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13510 2279..2437 +
1692277586.643168-CDS-M-pyrifera_M_contig13510:2278..24371692277586.643168-CDS-M-pyrifera_M_contig13510:2278..2437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13510 2279..2437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13510.5979.1prot_M-pyrifera_M_contig13510.5979.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13510 2279..2437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13510.5979.1

>prot_M-pyrifera_M_contig13510.5979.1 ID=prot_M-pyrifera_M_contig13510.5979.1|Name=mRNA_M-pyrifera_M_contig13510.5979.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWSIEELI
MD*
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mRNA from alignment at M-pyrifera_M_contig13510:2276..2437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13510.5979.1 ID=mRNA_M-pyrifera_M_contig13510.5979.1|Name=mRNA_M-pyrifera_M_contig13510.5979.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig13510:2276..2437+ (Macrocystis pyrifera P11B4 male)
AGCATGAACGCGCCGGTGATGGTGGACATCGAGAACGAGACGGACCCGTT
GAAGATCGCGATGAAGGAGCTCAGGGAGAGGAAAATTCCGATCAAAATCC
GACGATATTTGCCGGACGGCAGCCACGAGGATTGGTCTATCGAAGAGCTC
ATCATGGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13510:2276..2437+

>mRNA_M-pyrifera_M_contig13510.5979.1 ID=mRNA_M-pyrifera_M_contig13510.5979.1|Name=mRNA_M-pyrifera_M_contig13510.5979.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig13510:2276..2437+ (Macrocystis pyrifera P11B4 male)
ATGAACGCGCCGGTGATGGTGGACATCGAGAACGAGACGGACCCGTTGAA
GATCGCGATGAAGGAGCTCAGGGAGAGGAAAATTCCGATCAAAATCCGAC
GATATTTGCCGGACGGCAGCCACGAGGATTGGTCTATCGAAGAGCTCATC
ATGGACTGAATGAACGCGCCGGTGATGGTGGACATCGAGAACGAGACGGA
CCCGTTGAAGATCGCGATGAAGGAGCTCAGGGAGAGGAAAATTCCGATCA
AAATCCGACGATATTTGCCGGACGGCAGCCACGAGGATTGGTCTATCGAA
GAGCTCATCATGGACTGA
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