prot_M-pyrifera_M_contig12952.5797.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig12952.5797.1
Unique Nameprot_M-pyrifera_M_contig12952.5797.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length358
Homology
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BLAST of mRNA_M-pyrifera_M_contig12952.5797.1 vs. uniprot
Match: D8LQQ9_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ9_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.960e-49
Identity = 164/321 (51.09%), Postives = 183/321 (57.01%), Query Frame = 0 
Query:    1 ELDLSFNKVSGEGIAALAASLQHPRCRVARLILSQNGIGRRGGEHLGKMLAGV---EGGGQWGQQVACLRELNLADNTLGDDGVEDLSEGLLGHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPRTLAKMLVRNGSLKALDLSYNPVGPEGLXXXXXXXXXXXXXXXXXXRGCGVQPHGVKSGIYALARGLHTNRAITSLDLAANGLDEYAGQELAHALLKNKTLTTIDLTGNNSIPDEWLRENHQVRSEVYGFLPSLAESLRLNRVRRES-----GAFVSPRSAHLKKMREKEARADER 313
            ELDLSFN++SG GIAALAASL  PRCR++ L LSQNGIGRRGGEHLGKMLAG    +GG QWGQ         L  N +G DG + L E LL +                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   +                                 V+P GVKSGIY LA+GL TNRA+TSLDLAAN LDEYAGQELAH                N +PDEWLRE+H++ SEVY  LPSLAESLRLNR RR       G   SPR+ HL++ R KEARA ER
Sbjct:  704 ELDLSFNRISGAGIAALAASLGDPRCRLSWLSLSQNGIGRRGGEHLGKMLAGGSEDDGGAQWGQI--------LDGNDIGHDGTQGLCEALLQNHSILKLSLRRNLLLADSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE---------------------------------VEPTGVKSGIYTLAQGLCTNRALTSLDLAANELDEYAGQELAHXXXXXXXXXXXXXXXXN-VPDEWLREHHKICSEVYDILPSLAESLRLNRARRTDLITTIGRRASPRTIHLERTRAKEARASER 982
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BLAST of mRNA_M-pyrifera_M_contig12952.5797.1 vs. uniprot
Match: A0A6H5KN13_9PHAE (AMPK1_CBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN13_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 2.490e-47
Identity = 155/321 (48.29%), Postives = 173/321 (53.89%), Query Frame = 0 
Query:    1 ELDLSFNKVSGEGIAALAASLQHPRCRVARLILSQNGIGRRGGEHLGKMLAGV---EGGGQWGQQVACLRELNLADNTLGDDGVEDLSEGLLGHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPRTLAKMLVRNGSLKALDLSYNPVGPEGLXXXXXXXXXXXXXXXXXXRGCGVQPHGVKSGIYALARGLHTNRAITSLDLAANGLDEYAGQELAHALLKNKTLTTIDLTGNNSIPDEWLRENHQVRSEVYGFLPSLAESLRLNRVRRES-----GAFVSPRSAHLKKMREKEARADER 313
            EL+LSFN++SG GIAALA SL  PRCR++ L LSQNGIGRRGGEHLGKMLAG    EGG QWGQ V CLREL LADN LGDDG EDL+EGL GH XXXXXXXXXXXXXXXXXXXXXXXX                             A++L+RNG+++ LDL+YNP+GPEGL                  RGC V+P GVKSGIY LA                                                             EVY  LPSLAESLRLNR RR       G   SPR+ HL++ R KEA A ER
Sbjct:  389 ELNLSFNRISGAGIAALAVSLGDPRCRLSWLSLSQNGIGRRGGEHLGKMLAGGGEDEGGAQWGQ-VPCLRELVLADNMLGDDGAEDLAEGLKGHXXXXXXXXXXXXXXXXXXXXXXXXXLQNHSMKKLSLRRNLLLADS---------AELLLRNGAIETLDLAYNPIGPEGLRRLSGFLWKNTSLETLGLRGCEVEPAGVKSGIYTLAH------------------------------------------------------------EVYDILPSLAESLRLNRTRRTDLITTIGRRASPRTIHLERTRAKEACASER 639
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BLAST of mRNA_M-pyrifera_M_contig12952.5797.1 vs. uniprot
Match: W5M1V7_LEPOC (NACHT domain-containing protein n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5M1V7_LEPOC)

HSP 1 Score: 58.2 bits (139), Expect = 1.580e-5
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 0 
Query:    1 ELDLSFNKVSGEGIAALAASLQHPRCRVARLILSQNGIGRRGGEHLGKMLAGVEGGGQWGQQVACLRELNLADNTLGDDGVEDLSEGL 88
            EL+L  N++  +G+  L+  L HP C++ +L L   G+     ++L   L  V+         + LREL L+ NT+GDDGV+ LSEGL
Sbjct:  720 ELELMMNQIEDDGLKKLSTGLTHPNCKLQKLGLRHCGLTAGSCQYLSSSLCRVQ---------SSLRELVLSRNTVGDDGVKILSEGL 798
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BLAST of mRNA_M-pyrifera_M_contig12952.5797.1 vs. uniprot
Match: UPI0013F1F43D (NACHT, LRR and PYD domains-containing protein 12-like n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=UPI0013F1F43D)

HSP 1 Score: 53.9 bits (128), Expect = 9.650e-5
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 0 
Query:    1 ELDLSFNKVSGEGIAALAASLQHPRCRVARLILSQNGIGRRGGEHLGKMLAGVEGGGQWGQQVACLRELNLADNTLGDDGVEDLSEGLLGHP 92
            ELDL  +K+   G+  L   L HP C++ RL+L   GI   G ++   +L+  +           L+EL+L  + LGD GV+ L EGL  HP
Sbjct:   26 ELDLRGSKLGDSGVKQLCERLNHPNCKLQRLVLGDCGIAASGCKYFASVLSANQ----------TLKELDLRGSKLGDLGVKQLCEGLK-HP 106
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12952.5797.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LQQ9_ECTSI1.960e-4951.09Hypothetical leucine rich repeat calcium binding p... [more]
A0A6H5KN13_9PHAE2.490e-4748.29AMPK1_CBM domain-containing protein n=1 Tax=Ectoca... [more]
W5M1V7_LEPOC1.580e-537.50NACHT domain-containing protein n=2 Tax=Lepisosteu... [more]
UPI0013F1F43D9.650e-535.87NACHT, LRR and PYD domains-containing protein 12-l... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 300..320
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 212..239
e-value: 9.0
score: 10.4
coord: 91..118
e-value: 18.0
score: 8.2
coord: 63..90
e-value: 0.0013
score: 28.0
coord: 119..151
e-value: 25.0
score: 7.3
coord: 180..211
e-value: 1.6
score: 15.6
coord: 152..179
e-value: 0.0018
score: 27.6
coord: 25..52
e-value: 3.6
score: 13.2
coord: 1..23
e-value: 14.0
score: 9.0
NoneNo IPR availablePANTHERPTHR24107:SF2MAP-HOMOLOGOUS PROTEIN 1coord: 1..191
NoneNo IPR availablePANTHERPTHR24107:SF2MAP-HOMOLOGOUS PROTEIN 1coord: 94..252
coord: 182..280
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 182..280
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 1..191
coord: 94..252
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 1..267
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 65..85
e-value: 5.9E-4
score: 19.7
coord: 1..18
e-value: 0.019
score: 15.0
coord: 154..173
e-value: 0.0041
score: 17.0
coord: 239..256
e-value: 0.58
score: 10.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..140
e-value: 1.7E-27
score: 97.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 141..270
e-value: 2.1E-25
score: 90.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12952contigM-pyrifera_M_contig12952:251..8672 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12952.5797.1mRNA_M-pyrifera_M_contig12952.5797.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig12952 251..8672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig12952.5797.1 ID=prot_M-pyrifera_M_contig12952.5797.1|Name=mRNA_M-pyrifera_M_contig12952.5797.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=358bp
ELDLSFNKVSGEGIAALAASLQHPRCRVARLILSQNGIGRRGGEHLGKML
AGVEGGGQWGQQVACLRELNLADNTLGDDGVEDLSEGLLGHPCLETLVLD
GNDIGLDGTDRLSGALLCNTSLLKLSLRRNCLLADAAQARKPRTLAKMLV
RNGSLKALDLSYNPVGPEGLRRLSVFLISNSRLETLALRGCGVQPHGVKS
GIYALARGLHTNRAITSLDLAANGLDEYAGQELAHALLKNKTLTTIDLTG
NNSIPDEWLRENHQVRSEVYGFLPSLAESLRLNRVRRESGAFVSPRSAHL
KKMREKEARADERHRRQERARRRAQCRRRRQRGRKDRKRSRRRKRRRRKG
QGRNEVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf