prot_M-pyrifera_M_contig127064.5445.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig127064.5445.1
Unique Nameprot_M-pyrifera_M_contig127064.5445.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length117
Homology
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: A0A4X2LHD2_VOMUR (DNA repair protein n=2 Tax=Vombatus ursinus TaxID=29139 RepID=A0A4X2LHD2_VOMUR)

HSP 1 Score: 71.2 bits (173), Expect = 3.230e-12
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 0
Query:    7 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 117
            + E L    AIL+TG A++D ++D G++ G VTE+ GPP SGK+Q+C+  AA  A S G +V Y+D++  L+  RLL   +          +D   +A  L+ +H VR F +
Sbjct:   71 LYEELKTSTAILATGIASLDKLLDSGLYTGEVTEITGPPASGKTQVCLCTAASVAYSLGQSVLYIDSTGGLTASRLLQLLQ-------ARTEDEEEQAGALQRIHVVRVFDI 175          
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: A0A8C5LTF9_9ANUR (RECA_2 domain-containing protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5LTF9_9ANUR)

HSP 1 Score: 69.3 bits (168), Expect = 1.840e-11
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 0
Query:    7 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVSG------GTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRAL 109
            ++E+   +G I+ T  +A+D ++ GG+H   VTE+CGPPG GK+QLCM++A +  + G      G V Y+DT +S  VERL+      V + C  +  + +  E ++A+
Sbjct:   74 LLEQEQAQGFII-TFCSAVDDLLGGGIHLNKVTEICGPPGVGKTQLCMQLAVDVQIPGCFGGVAGEVVYIDTENSFLVERLVDIANACV-EHCELITQSNQEDEHIKAM 180          
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: UPI001470E27A (DNA repair protein RAD51 homolog 4 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001470E27A)

HSP 1 Score: 68.9 bits (167), Expect = 2.210e-11
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 0
Query:    7 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 117
            + E L    AI+STG+ ++D ++D GV+ G +TELCG P SGK+Q+C+ VAA  +     +V Y+DT+  LS  RLL      +  +  + D      E ++AL R+  F++
Sbjct:   71 LYEELLSSTAIISTGNPSLDQLLDSGVYTGEITELCGSPASGKTQVCLGVAAHVSHQLKQSVIYVDTTGGLSASRLLQM----LHAETSNTD------EQMQALQRIHVFQI 172          
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: UPI001A99D27B (DNA repair protein RAD51 homolog 4 isoform X3 n=3 Tax=Percomorphaceae TaxID=1489872 RepID=UPI001A99D27B)

HSP 1 Score: 68.2 bits (165), Expect = 3.210e-11
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 0
Query:    7 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 117
            + E L    AILSTG+ ++D ++D G++ G +TEL G PGSGKSQ+C RVA   +     +V Y+DT+  L+  RLL   +           + +   E + AL R+  FR+
Sbjct:   71 LYEELLSSTAILSTGNPSLDKLLDSGLYTGEITELSGGPGSGKSQVCFRVAVHISYQLKQSVIYIDTTGGLTAGRLLQMLQA----------ETSNTEEQMEALQRIHIFRL 172          
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: UPI001CFEE07A (DNA repair protein RAD51 homolog 4 n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFEE07A)

HSP 1 Score: 67.4 bits (163), Expect = 3.280e-11
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 0
Query:    7 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 117
            + E L    AILSTG A +D ++D G++ G VTE+ G P SGK+Q+C+  +A  A S G  V Y+D++  L+  RLL   +          +D   +A  L+++H VR F +
Sbjct:   45 LYEELKTSTAILSTGMARLDKLLDSGLYTGEVTEITGAPASGKTQVCLCASAHVAHSLGQDVLYIDSTGGLTASRLLQLLQ-------ARTEDEEEQARALQSIHVVRVFDI 149          
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: UPI001A987BDC (DNA repair protein RAD51 homolog 4 isoform X2 n=1 Tax=Xiphias gladius TaxID=8245 RepID=UPI001A987BDC)

HSP 1 Score: 68.2 bits (165), Expect = 4.080e-11
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 0
Query:    7 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 117
            + E L    AILSTG+ ++D ++D G++ G +TEL G PGSGKSQ+C RVA   +     +V Y+DT+  L+  RLL   +           + +   E + AL R+  FR+
Sbjct:   71 LYEELLSSTAILSTGNPSLDKLLDSGLYTGEITELSGGPGSGKSQVCFRVAVHISYQLKQSVIYIDTTGGLTAGRLLQMLQA----------ETSNTEEQMEALQRIHIFRL 172          
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: A0A8C4S124_ERPCA (DNA repair protein RAD51 homolog 4-like n=3 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4S124_ERPCA)

HSP 1 Score: 66.6 bits (161), Expect = 4.600e-11
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 0
Query:    7 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAV 89
            + + L    AILSTG+ ++D ++D G++ G VTEL G PGSGK+Q+C+ VAA  A      V Y+D++  LS  RLL   +  V
Sbjct:   50 LYDELLSSTAILSTGNESLDKLLDSGLYTGEVTELIGSPGSGKTQVCLGVAANVACELKRNVVYIDSTGGLSASRLLEIVKSKV 133          
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: G3QCE3_GASAC (RAD51 paralog D n=3 Tax=Gasterosteidae TaxID=69291 RepID=G3QCE3_GASAC)

HSP 1 Score: 67.4 bits (163), Expect = 7.930e-11
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 0
Query:    7 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETA--VSGGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 117
            + E L    AI+STG+  +D ++D G++ G +TELCG P SGKSQ+C  VA   +  +  G V ++DT+  LS  RLL      +R +   V+      E + AL RVR FR+
Sbjct:   71 LYEELLSSTAIVSTGNPGLDKLLDSGLYTGEITELCGGPASGKSQVCFGVAVHVSCRLKQGVV-FIDTTGGLSAGRLLQM----LRAETSGVE------EQMEALQRVRVFRL 172          
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: UPI001EB019C1 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Marmota monax TaxID=9995 RepID=UPI001EB019C1)

HSP 1 Score: 66.2 bits (160), Expect = 8.340e-11
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 0
Query:    7 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 117
            + E +    AILSTG  ++D ++D G++ G VTE+ G PGSGK+Q+C+ VAA  A      V Y+D++  L+  RLL   +P  +    D ++  R  + ++ +H    F++
Sbjct:   71 LYEEMKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHGLQQNVLYIDSNGGLTASRLLQLLQPRTQ----DEEEQARALQRIQVVHAFDIFQI 178          
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: UPI000B77DE8F (DNA repair protein RAD51 homolog 4 isoform X4 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B77DE8F)

HSP 1 Score: 67.0 bits (162), Expect = 9.030e-11
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 0
Query:    7 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVSG-GTVAYLDTSSSLSVERLLHFCEPAVRKKCGDV 96
            ++E   +   +LSTG   +D +++GG+  G +TEL GP  SGK+QLC+RVAA  A+   G V +LDT +S S  R+ HF    VR+  G V
Sbjct:   58 LLEDAQQNKHVLSTGFKGIDKLLEGGLREGQLTELVGPSSSGKTQLCLRVAANVAIQHKGRVIFLDTGNSFSPRRIEHF----VRQISGSV 144          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4X2LHD2_VOMUR3.230e-1237.50DNA repair protein n=2 Tax=Vombatus ursinus TaxID=... [more]
A0A8C5LTF9_9ANUR1.840e-1135.78RECA_2 domain-containing protein n=1 Tax=Leptobrac... [more]
UPI001470E27A2.210e-1136.61DNA repair protein RAD51 homolog 4 n=1 Tax=Thalass... [more]
UPI001A99D27B3.210e-1136.61DNA repair protein RAD51 homolog 4 isoform X3 n=3 ... [more]
UPI001CFEE07A3.280e-1136.61DNA repair protein RAD51 homolog 4 n=1 Tax=Gracili... [more]
UPI001A987BDC4.080e-1136.61DNA repair protein RAD51 homolog 4 isoform X2 n=1 ... [more]
A0A8C4S124_ERPCA4.600e-1142.86DNA repair protein RAD51 homolog 4-like n=3 Tax=Er... [more]
G3QCE3_GASAC7.930e-1138.94RAD51 paralog D n=3 Tax=Gasterosteidae TaxID=69291... [more]
UPI001EB019C18.340e-1133.93DNA repair protein RAD51 homolog 4-like n=1 Tax=Ma... [more]
UPI000B77DE8F9.030e-1142.86DNA repair protein RAD51 homolog 4 isoform X4 n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 17..86
e-value: 1.1E-13
score: 51.1
NoneNo IPR availableGENE3D3.40.50.300coord: 2..117
e-value: 2.7E-22
score: 81.5
NoneNo IPR availablePANTHERPTHR46457FAMILY NOT NAMEDcoord: 7..117
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 14..117
score: 23.078
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 18..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127064contigM-pyrifera_M_contig127064:149..499 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127064.5445.1mRNA_M-pyrifera_M_contig127064.5445.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig127064 137..499 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig127064.5445.1 ID=prot_M-pyrifera_M_contig127064.5445.1|Name=mRNA_M-pyrifera_M_contig127064.5445.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MQTCDAIIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKS
QLCMRVAAETAVSGGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDAT
RRAELLRALHRVRHFRV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase