prot_M-pyrifera_M_contig126572.5350.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig126572.5350.1
Unique Nameprot_M-pyrifera_M_contig126572.5350.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length50
Homology
BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: D8LBV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV9_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.850e-20
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 0
Query:    1 GPVTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 49
            GPVTYCVLLKGYGRQRRL GVE  MR+M+ RG+VPDVVALNAAVDAFVR
Sbjct:  119 GPVTYCVLLKGYGRQRRLGGVESTMREMKERGIVPDVVALNAAVDAFVR 167          
BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: A0A6H5L7F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F1_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.180e-19
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0
Query:    1 GPVTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 49
            GPVTYCVLLKGYGRQRRL GVE  MR+M+ RG+VPDVVALNAAVDA VR
Sbjct:  582 GPVTYCVLLKGYGRQRRLRGVESTMREMKERGIVPDVVALNAAVDALVR 630          
BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: A0A835YV31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV31_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-11
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 GPVTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 49
            G VT+C+L+KGYGRQRR   V+  +R MR   V PDVV LNAAVDA+VR
Sbjct:  131 GNVTHCILVKGYGRQRRAHRVDAALRGMRRARVAPDVVTLNAAVDAYVR 179          
BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: A0A7S2SBE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBE2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.460e-8
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0
Query:    3 VTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 49
            VTYC+L+KGYGR      V+ ++ DMR  GV  DV+ LNAA+DA+VR
Sbjct:   76 VTYCILIKGYGRLGSDQAVDHLLADMRKHGVKLDVITLNAAMDAYVR 122          
BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: A0A7S0LHA5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHA5_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 2.630e-5
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0
Query:    3 VTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 49
            +T+C+L+KGYGR   +  V  +   MR R V PD+   NA +DA VR
Sbjct:  177 LTFCILIKGYGRVADIPRVRRIYSTMRRRSVAPDLATFNALLDAIVR 223          
BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: A0A836CQL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQL2_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 9.220e-5
Identity = 23/47 (48.94%), Postives = 26/47 (55.32%), Query Frame = 0
Query:    3 VTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 49
            V YC+L+KGYGRQ                   PDVV LNAAVDA+VR
Sbjct:  255 VAYCILIKGYGRQXXXXXXXXXXXXXXXXXXXPDVVTLNAAVDAYVR 301          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LBV9_ECTSI5.850e-2085.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7F1_9PHAE5.180e-1983.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV31_9STRA1.470e-1163.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SBE2_9STRA3.460e-855.32Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0LHA5_9EUKA2.630e-544.68Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A836CQL2_9STRA9.220e-548.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..49
e-value: 3.9E-10
score: 41.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 3..48
e-value: 1.9E-7
score: 31.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 3..37
e-value: 9.8E-10
score: 36.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..35
score: 10.633

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126572contigM-pyrifera_M_contig126572:145..294 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126572.5350.1mRNA_M-pyrifera_M_contig126572.5350.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig126572 145..294 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig126572.5350.1 ID=prot_M-pyrifera_M_contig126572.5350.1|Name=mRNA_M-pyrifera_M_contig126572.5350.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
GPVTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat