prot_M-pyrifera_M_contig1263.5310.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig1263.5310.1
Unique Nameprot_M-pyrifera_M_contig1263.5310.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length87
Homology
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: D7FTY7_ECTSI (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY7_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 8.120e-44
Identity = 72/87 (82.76%), Postives = 81/87 (93.10%), Query Frame = 0
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 87
            ADDGKLGTKLYHAVN+V+L GVPA +ATSPSALTMPLD+VLG+A+PLHAHIGMNYVISDYVPK  RG ARGAMLAAS++A LGLLK+
Sbjct:   42 ADDGKLGTKLYHAVNMVVLAGVPAAVATSPSALTMPLDIVLGIAMPLHAHIGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKL 128          
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: W7TCL8_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCL8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.620e-23
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 0
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 87
            AD G +GTK YH  N  +L   P  +  SPS LT PLD+ LG+A P+H HIG+NY+ISDYVP+  R  AR  +L A+ V  LGLLK+
Sbjct:   56 ADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKL 142          
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A7S2WU59_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU59_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.200e-19
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 0
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPF----RGQARGAMLAASIVAALGL 84
            AD+G + TKLYH +N+ +L   P      PS +T PLD+ LG+ +PLH HIGMNYVI+DYVPK F    RG AR  ML  + V   GL
Sbjct:   35 ADEGAMSTKLYHNLNMGLLVVTPPAFLFGPSYVTFPLDLALGVMMPLHGHIGMNYVITDYVPKFFGKAARGPARVIMLGVTGVTMAGL 122          
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A835YQL9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.160e-18
Identity = 42/87 (48.28%), Postives = 63/87 (72.41%), Query Frame = 0
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 87
            AD GKLGT ++H +N  +L  +P V+  +P+ +  P++++L +A PLHAH+ MNYVISDYVP+  +  AR AML  + VA+LGL+K+
Sbjct:   40 ADVGKLGTSMFHYLNYGLLAALP-VLLVAPTPVRTPVELLLAVAFPLHAHVSMNYVISDYVPRFAQQPARIAMLGVTAVASLGLIKL 125          
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A3M6VF14_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF14_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.620e-18
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 0
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 87
            AD+  L TKL H  N+ ++  VP     SPS L +P+D+ +G+ LP+HAHIGMN VISDYVPK  R  AR   L A+ +  LGLL+V
Sbjct:   55 ADNHVLSTKLMHLTNVSLMIAVPLAFVLSPSPLVLPVDLAVGVILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRV 141          
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A662YC78_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YC78_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.970e-18
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 87
            AD+    TKL H  ++ ++  VP     SPS L MP+D+ LG  LP+HAHIGMN VISDYVPK  R  AR + L  + V  LGLL+V
Sbjct:   65 ADNATFSTKLQHLSSMGLMALVPVAFVLSPSPLAMPVDLALGAILPIHAHIGMNNVISDYVPKRMRTLARVSWLGVTAVMFLGLLRV 151          
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A7S3PKA9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PKA9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.420e-18
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 87
            AD      KL+H  NL ++   P  I   PS L+MP+DV L +  PLHAH+GMN + +DYVP    G AR A+LA S+++ +GLLK+
Sbjct:   42 ADQTLSQAKLFHKTNLAVMVLTPLAIVAHPSPLSMPVDVALAIVFPLHAHMGMNIIFTDYVPGSPTGPARMALLAVSVLSTIGLLKL 128          
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A225WU41_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WU41_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.110e-18
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 0
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 87
            AD+ KL  KL H  ++ ++  VP     SPS L +P+D+ +G+ LP+HAHIGMN VISDYVPK  R   R   L A+ +  LGLL+V
Sbjct:   46 ADNHKLSVKLQHLTSVALMGAVPLAFVLSPSPLVLPVDLAMGVILPVHAHIGMNNVISDYVPKNMRTLVRLGWLGATSLMFLGLLRV 132          
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: D0NIT5_PHYIT (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=11 Tax=Phytophthora TaxID=4783 RepID=D0NIT5_PHYIT)

HSP 1 Score: 82.4 bits (202), Expect = 5.880e-18
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 0
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 87
            AD+  L  KL H  ++ ++  VP     SPS L +P+D+ LGL LP+HAHIGMN VISDYVPK  R  AR   L A+ +  LGLL+V
Sbjct:   51 ADNHALSVKLQHLTSVSLMGAVPLAFVLSPSPLVLPVDLALGLILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRV 137          
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: W4GD77_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GD77_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.890e-18
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 0
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLL 85
            AD+ K  +K+ H  +  +L  VPA +  SPSAL +P+D +L + +P+H+HIG+N V+SDYVPK F+  AR  +L ASIV  LGL+
Sbjct:   44 ADNSKHTSKVMHYTSYGLLALVPAAVVLSPSALNVPVDYLLAVLVPVHSHIGINNVVSDYVPKNFKTLARAGVLGASIVTFLGLI 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY7_ECTSI8.120e-4482.76Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W7TCL8_9STRA6.620e-2352.87Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S2WU59_9STRA2.200e-1951.14Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A835YQL9_9STRA1.160e-1848.28Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A3M6VF14_9STRA1.620e-1850.57Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A662YC78_9STRA3.970e-1850.57Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S3PKA9_9STRA4.420e-1845.98Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A225WU41_9STRA5.110e-1848.28Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
D0NIT5_PHYIT5.880e-1850.57Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W4GD77_9STRA6.890e-1848.24Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05328CybScoord: 12..84
e-value: 3.8E-7
score: 29.9
NoneNo IPR availablePANTHERPTHR13337:SF2SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL SUBUNIT, MITOCHONDRIALcoord: 3..86
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..68
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..85
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 86..87
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..57
NoneNo IPR availableTMHMMTMhelixcoord: 68..85
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10coord: 6..87
e-value: 1.7E-11
score: 46.0
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitSUPERFAMILY81343Fumarate reductase respiratory complex transmembrane subunitscoord: 21..81
IPR007992Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybSPANTHERPTHR13337SUCCINATE DEHYDROGENASEcoord: 3..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1263contigM-pyrifera_M_contig1263:15642..16789 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1263.5310.1mRNA_M-pyrifera_M_contig1263.5310.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig1263 15642..16789 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig1263.5310.1 ID=prot_M-pyrifera_M_contig1263.5310.1|Name=mRNA_M-pyrifera_M_contig1263.5310.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAH
IGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034804SQR/QFR_C/D
IPR007992CybS