prot_M-pyrifera_M_contig126262.5295.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig126262.5295.1
Unique Nameprot_M-pyrifera_M_contig126262.5295.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length106
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig126262.5295.1 vs. uniprot
Match: A0A8D9EXC3_9HEMI (Zinc finger protein 2 (Fragment) n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9EXC3_9HEMI)

HSP 1 Score: 49.7 bits (117), Expect = 3.750e-5
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0 
Query:    1 CGKSFKSSDGLRHHKRSKHEGVRYPCSRCPKSFTYQSALRVH 42
            C KSF     L  H RS HEG++YPCS+C KSF  +S LR H
Sbjct:    2 CPKSFSRKGELNKHVRSTHEGIKYPCSKCSKSFLDRSNLRRH 43
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126262.5295.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8D9EXC3_9HEMI3.750e-554.76Zinc finger protein 2 (Fragment) n=2 Tax=Cacopsyll... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 1..19
e-value: 67.0
score: 5.9
coord: 24..46
e-value: 0.0039
score: 26.4
coord: 51..74
e-value: 1.2E-4
score: 31.5
coord: 79..102
e-value: 0.44
score: 19.6
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 79..102
e-value: 3.5E-4
score: 20.9
coord: 51..74
e-value: 4.0E-7
score: 30.1
coord: 24..46
e-value: 1.2E-5
score: 25.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 26..46
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 81..102
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 53..74
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 79..102
score: 10.201
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 1..24
score: 9.993
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 51..79
score: 12.819
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 24..51
score: 13.006
NoneNo IPR availableGENE3D3.30.160.60coord: 1..48
e-value: 4.4E-12
score: 47.9
NoneNo IPR availableGENE3D3.30.160.60coord: 77..103
e-value: 6.4E-5
score: 25.1
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 1..20
e-value: 0.0016
score: 18.4
NoneNo IPR availableGENE3D3.30.160.60coord: 49..74
e-value: 1.2E-8
score: 36.8
NoneNo IPR availablePANTHERPTHR24388FAMILY NOT NAMEDcoord: 1..102
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 59..102
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 22..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126262contigM-pyrifera_M_contig126262:5..322 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126262.5295.1mRNA_M-pyrifera_M_contig126262.5295.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig126262 5..322 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig126262.5295.1 ID=prot_M-pyrifera_M_contig126262.5295.1|Name=mRNA_M-pyrifera_M_contig126262.5295.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
CGKSFKSSDGLRHHKRSKHEGVRYPCSRCPKSFTYQSALRVHEQIHDGVR
HVCEECGKSYSDRSNLISHMKSSHFGVRFPCGECSKTFTTKRYATIHRRK
AHGVG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf