prot_M-pyrifera_M_contig126066.5266.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig126066.5266.1
Unique Name	prot_M-pyrifera_M_contig126066.5266.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	170

Homology

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BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Match: A0A2D8GI33_9ACTN (DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GI33_9ACTN)

HSP 1 Score: 312 bits (800), Expect = 1.550e-100
Identity = 158/170 (92.94%), Postives = 166/170 (97.65%), Query Frame = 0

Query:    1 TVNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLGNVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKAIRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 170
            TVN YARD+G LKEKDDNLTGEDIREGLTAIISARIG+PQFEGQTKSKLGNVSMRSLVE+VTNE+MAEWLEEHP EGK IVTKATNAARAR+AA+DARKAIRSKSLLDGAGMPDKLKDCSAK+PERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERAR+DKM
Sbjct:  343 TVNNYARDKGLLKEKDDNLTGEDIREGLTAIISARIGEPQFEGQTKSKLGNVSMRSLVEKVTNEKMAEWLEEHPAEGKAIVTKATNAARARVAAADARKAIRSKSLLDGAGMPDKLKDCSAKEPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARVDKM 512

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BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Match: A0A7X5WVW5_9ACTN (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WVW5_9ACTN)

HSP 1 Score: 307 bits (787), Expect = 8.980e-99
Identity = 155/170 (91.18%), Postives = 165/170 (97.06%), Query Frame = 0

Query:    1 TVNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLGNVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKAIRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 170
            TVNAYAR++G LKEKD+NL GEDIREGLTAI+S RIG+PQFEGQTKSKLGNVSMRSLVERVTNER+AEWLEEHPGE K +VTKATNAARAR+AA+DARKAIRSKSLLDGAGMPDKLKDCSAK+PERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM
Sbjct:  326 TVNAYAREKGTLKEKDENLQGEDIREGLTAIVSVRIGEPQFEGQTKSKLGNVSMRSLVERVTNERLAEWLEEHPGEAKALVTKATNAARARVAAADARKAIRSKSLLDGAGMPDKLKDCSAKEPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 495

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BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Match: A0A7K1ZBL8_9ACTN (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZBL8_9ACTN)

HSP 1 Score: 305 bits (780), Expect = 9.960e-98
Identity = 154/170 (90.59%), Postives = 162/170 (95.29%), Query Frame = 0

Query:    1 TVNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLGNVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKAIRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 170
            TVN YAR++G LKEKDDNLTGEDIREGLTAIISARIG+PQFEGQTKSKLGNVSMRSLVERVTNERMA+WLEEHPGE K  +TKATNAARAR+AA+DARKAIRSKSLLDGAGMPDKLKDCS+KDP  RELFIVEGDSAGGSAVRARDP TQAILPIRGKILNVERARIDKM
Sbjct:  326 TVNTYARNKGLLKEKDDNLTGEDIREGLTAIISARIGEPQFEGQTKSKLGNVSMRSLVERVTNERMADWLEEHPGEAKATITKATNAARARVAAADARKAIRSKSLLDGAGMPDKLKDCSSKDPAERELFIVEGDSAGGSAVRARDPRTQAILPIRGKILNVERARIDKM 495

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BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Match: A0A3M2GUA3_ACTSX (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GUA3_ACTSX)

HSP 1 Score: 300 bits (769), Expect = 3.520e-96
Identity = 151/170 (88.82%), Postives = 164/170 (96.47%), Query Frame = 0

Query:    1 TVNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLGNVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKAIRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 170
            TVNAYARD+G LKE+DDNLTG+DIREGLTAIISAR+ +PQFEGQTKSKLGNVSMRSLVE+VTNER+AEWLEEHPGE + IVTKA NAARAR+AA+DARKAIR+KSLLDGAGMPDKLKDCSA++PERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERAR DKM
Sbjct:  318 TVNAYARDKGLLKERDDNLTGDDIREGLTAIISARLAEPQFEGQTKSKLGNVSMRSLVEKVTNERLAEWLEEHPGEARKIVTKALNAARARVAAADARKAIRAKSLLDGAGMPDKLKDCSAREPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARPDKM 487

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BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Match: A0A351IV20_9ACTN (DNA topoisomerase (ATP-hydrolyzing) n=5 Tax=root TaxID=1 RepID=A0A351IV20_9ACTN)

HSP 1 Score: 263 bits (671), Expect = 9.180e-82
Identity = 132/169 (78.11%), Postives = 144/169 (85.21%), Query Frame = 0

Query:    2 VNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLGNVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKAIRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 170
            VN YAR RG LKE DDNL GEDIREGLTAIIS R+ DPQFEGQTKSKLGNV  RSLV+R TNE++AEWLEEHP EGK I+ KA NA RAR+AA DARK+ R KS LDGAGMPDKLKDC+++DP   ELFIVEGDSAGGSAV+ARDP T AILPIRGKILNVERAR D+M
Sbjct:  302 VNRYARKRGLLKENDDNLQGEDIREGLTAIISVRLEDPQFEGQTKSKLGNVETRSLVQRTTNEKLAEWLEEHPSEGKRILQKAVNAQRARVAAQDARKSARRKSALDGAGMPDKLKDCASRDPRESELFIVEGDSAGGSAVQARDPRTMAILPIRGKILNVERARADRM 470

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BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Match: A0A800LRE1_9ACTN (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800LRE1_9ACTN)

HSP 1 Score: 261 bits (668), Expect = 2.500e-81
Identity = 131/169 (77.51%), Postives = 145/169 (85.80%), Query Frame = 0

Query:    2 VNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLGNVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKAIRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 170
            +N YAR +G LKEKDDNL GEDIREG+T IIS R+GDPQFEGQTKSKLGNV +RSLV++ TNER+AEWLEEHP E K ++ KA NA RARIAA DARK+ R KS LDGAGMPDKLKDCS++DP   ELFIVEGDSAGGSAV+ARDP T AILPIRGKILNVERAR DKM
Sbjct:  301 MNRYARVKGLLKEKDDNLQGEDIREGMTTIISVRLGDPQFEGQTKSKLGNVEIRSLVQKATNERLAEWLEEHPSEAKRVLQKAINAQRARIAAHDARKSARRKSALDGAGMPDKLKDCSSRDPRESELFIVEGDSAGGSAVQARDPRTMAILPIRGKILNVERARPDKM 469

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BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Match: A0A382KS51_9ZZZZ (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382KS51_9ZZZZ)

HSP 1 Score: 254 bits (648), Expect = 8.490e-81
Identity = 121/169 (71.60%), Postives = 147/169 (86.98%), Query Frame = 0

Query:    2 VNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLGNVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKAIRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 170
            +N +A+ RG +K+KDDNL GEDIREGLTAIIS R+G+PQFEGQTKSKLGNV +RSLV++ TNE++++WLEEHP E K+I+ KA NA RAR+AA DAR++ R KS LDGAGMP+KLKDCS++DP   ELFIVEGDSAGGSA++ARDP T AILP+RGKILNVERAR D+M
Sbjct:  121 MNKHAKKRGLIKDKDDNLQGEDIREGLTAIISVRLGEPQFEGQTKSKLGNVDIRSLVQKTTNEKLSDWLEEHPAEAKIILQKAINAQRARLAAQDARRSARRKSALDGAGMPEKLKDCSSRDPRESELFIVEGDSAGGSAIQARDPRTMAILPLRGKILNVERARADRM 289

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BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Match: A0A382FPE9_9ZZZZ (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FPE9_9ZZZZ)

HSP 1 Score: 253 bits (645), Expect = 1.920e-80
Identity = 123/169 (72.78%), Postives = 147/169 (86.98%), Query Frame = 0

Query:    2 VNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLGNVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKAIRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 170
            VN YAR RG +K+KDDNL GEDIREGLTAI+S R+ DPQFEGQTKSKLGNV +RSLV++VTN+++A+WLEE+P E K +V KA NA RAR+AA +AR++ R KS LDGAGMPDKLKDC++KDP+  EL IVEGDSAGGSAV+ARDP T A+LPIRGKILNVERAR+D+M
Sbjct:   67 VNKYARRRGAIKDKDDNLQGEDIREGLTAIVSVRLVDPQFEGQTKSKLGNVEIRSLVQKVTNDKLADWLEENPSEAKRVVEKAVNAQRARLAAQEARRSARRKSALDGAGMPDKLKDCTSKDPKESELLIVEGDSAGGSAVQARDPRTMAVLPIRGKILNVERARVDRM 235

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BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Match: A0A3D5K493_9ACTN (DNA gyrase subunit B n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K493_9ACTN)

HSP 1 Score: 259 bits (661), Expect = 2.790e-80
Identity = 129/169 (76.33%), Postives = 143/169 (84.62%), Query Frame = 0

Query:    2 VNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLGNVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKAIRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 170
            +N YA+ R  LK+ DDNL GEDIREGLTAIIS R+ DPQFEGQTKSKLGNV MRSLV+R TN+R+A+WLEEHP E K IV KA NA RAR+AA DARK+ R KS LDGAGMPDKLKDC++KDP   ELFIVEGDSAGGSAV+ARDP T AILPIRGKILNVERAR D+M
Sbjct:  302 MNRYAKKRNLLKDNDDNLQGEDIREGLTAIISVRLSDPQFEGQTKSKLGNVEMRSLVQRTTNDRLADWLEEHPPEAKAIVQKAINAQRARVAAQDARKSARRKSALDGAGMPDKLKDCASKDPRESELFIVEGDSAGGSAVQARDPRTMAILPIRGKILNVERARADRM 470

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BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Match: A0A6I3A784_9ACTN (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=root TaxID=1 RepID=A0A6I3A784_9ACTN)

HSP 1 Score: 258 bits (658), Expect = 2.020e-79
Identity = 125/169 (73.96%), Postives = 146/169 (86.39%), Query Frame = 0

Query:    2 VNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLGNVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKAIRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQAILPIRGKILNVERARIDKM 170
            +N YAR +G LKEKD+NL GEDIREGLTAII+ ++ +PQFEGQTK KLGNVS+RSLVER TN+++AEWLEEHP E +  V KAT +ARAR+AA +AR  +R K+LLDGAGMPDKL+DCS+ DP  RELFIVEGDSAGGSA +ARDP TQAILPIRGKILNVERAR+DKM
Sbjct:  348 INKYARAKGLLKEKDENLQGEDIREGLTAIIAVKLREPQFEGQTKGKLGNVSVRSLVERATNDKLAEWLEEHPSEARAAVAKATQSARARVAAQNARNTMRRKTLLDGAGMPDKLRDCSSSDPRERELFIVEGDSAGGSATQARDPRTQAILPIRGKILNVERARVDKM 516

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig126066.5266.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2D8GI33_9ACTN	1.550e-100	92.94	DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Acidim...	[more]
A0A7X5WVW5_9ACTN	8.980e-99	91.18	DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Actino...	[more]
A0A7K1ZBL8_9ACTN	9.960e-98	90.59	DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Acidim...	[more]
A0A3M2GUA3_ACTSX	3.520e-96	88.82	DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Actino...	[more]
A0A351IV20_9ACTN	9.180e-82	78.11	DNA topoisomerase (ATP-hydrolyzing) n=5 Tax=root T...	[more]
A0A800LRE1_9ACTN	2.500e-81	77.51	DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Acidim...	[more]
A0A382KS51_9ZZZZ	8.490e-81	71.60	DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1...	[more]
A0A382FPE9_9ZZZZ	1.920e-80	72.78	DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1...	[more]
A0A3D5K493_9ACTN	2.790e-80	76.33	DNA gyrase subunit B n=3 Tax=Acidimicrobiaceae bac...	[more]
A0A6I3A784_9ACTN	2.020e-79	73.96	DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=root T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000565	DNA topoisomerase, type IIA, subunit B	PRINTS	PR01159	DNAGYRASEB	coord: 69..83 score: 39.78 coord: 21..37 score: 61.18 coord: 83..103 score: 47.3
IPR001241	DNA topoisomerase, type IIA	SMART	SM00433	topII5	coord: 1..170 e-value: 0.0024 score: -360.9
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 1..104 e-value: 3.0E-35 score: 123.2
IPR006171	TOPRIM domain	PFAM	PF01751	Toprim	coord: 128..164 e-value: 8.5E-5 score: 22.7
IPR006171	TOPRIM domain	PROSITE	PS50880	TOPRIM	coord: 127..170 score: 11.513
IPR013506	DNA topoisomerase, type IIA, subunit B, domain 2	PFAM	PF00204	DNA_gyraseB	coord: 1..99 e-value: 9.1E-32 score: 109.9
IPR013759	DNA topoisomerase, type IIA, subunit B, C-terminal	GENE3D	3.40.50.670		coord: 105..170 e-value: 3.0E-24 score: 87.4
None	No IPR available	PANTHER	PTHR45866	FAMILY NOT NAMED	coord: 1..170
None	No IPR available	PANTHER	PTHR45866:SF1	DNA GYRASE SUBUNIT B, MITOCHONDRIAL	coord: 1..170
IPR018522	DNA topoisomerase, type IIA, conserved site	PROSITE	PS00177	TOPOISOMERASE_II	coord: 131..139
IPR013760	DNA topoisomerase, type IIA-like domain superfamily	SUPERFAMILY	56719	Type II DNA topoisomerase	coord: 104..170
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 2..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig126066	contig	M-pyrifera_M_contig126066:3..512 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig126066.5266.1	mRNA_M-pyrifera_M_contig126066.5266.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig126066 3..512 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig126066.5266.1 ID=prot_M-pyrifera_M_contig126066.5266.1|Name=mRNA_M-pyrifera_M_contig126066.5266.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
TVNAYARDRGFLKEKDDNLTGEDIREGLTAIISARIGDPQFEGQTKSKLG
NVSMRSLVERVTNERMAEWLEEHPGEGKVIVTKATNAARARIAASDARKA
IRSKSLLDGAGMPDKLKDCSAKDPERRELFIVEGDSAGGSAVRARDPETQ
AILPIRGKILNVERARIDKM

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000565	Topo_IIA_B
IPR001241	Topo_IIA
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR006171	TOPRIM_domain
IPR013506	Topo_IIA_bsu_dom2
IPR013759	Topo_IIA_B_C
IPR018522	TopoIIA_CS
IPR013760	Topo_IIA-like_dom_sf
IPR020568	Ribosomal_S5_D2-typ_fold