prot_M-pyrifera_M_contig125984.5245.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig125984.5245.1
Unique Nameprot_M-pyrifera_M_contig125984.5245.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length113
Homology
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BLAST of mRNA_M-pyrifera_M_contig125984.5245.1 vs. uniprot
Match: UPI0019FF4931 (DUF1565 domain-containing protein n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI0019FF4931)

HSP 1 Score: 51.6 bits (122), Expect = 3.140e-5
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0 
Query:   11 VLSLALGAGAAQYYFSPAGSDSNSGTSSQEPFLTLSRALNASAAGDTIEAASGNY 65
            V+S  + A    YY SP+GSDSNSGTS+  PF T+ +A++ +  GDTI  ASG Y
Sbjct:   23 VISAPVFAAGTNYYVSPSGSDSNSGTSAGSPFQTIQKAVDLAQPGDTINLASGTY 77
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125984.5245.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0019FF49313.140e-550.91DUF1565 domain-containing protein n=1 Tax=Chlorofl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011459Domain of unknown function DUF1565PFAMPF07602DUF1565coord: 28..67
e-value: 4.3E-6
score: 26.2
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 21..113
e-value: 4.1E-14
score: 54.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..113
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.815
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 7..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125984contigM-pyrifera_M_contig125984:173..511 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125984.5245.1mRNA_M-pyrifera_M_contig125984.5245.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig125984 170..511 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig125984.5245.1 ID=prot_M-pyrifera_M_contig125984.5245.1|Name=mRNA_M-pyrifera_M_contig125984.5245.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MKAAATLLLGVLSLALGAGAAQYYFSPAGSDSNSGTSSQEPFLTLSRALN
ASAAGDTIEAASGNYTGSENVGLSFDSRTISGAGADTVFQGSAGSTMFSP
SGAAAFANLTLKG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011459DUF1565
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence