prot_M-pyrifera_M_contig125944.5241.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig125944.5241.1
Unique Nameprot_M-pyrifera_M_contig125944.5241.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length162
Homology
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: V4AYP6_LOTGI (Transcription initiation factor IIB n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AYP6_LOTGI)

HSP 1 Score: 88.2 bits (217), Expect = 6.760e-18
Identity = 53/161 (32.92%), Postives = 91/161 (56.52%), Query Frame = 0
Query:    2 VVCRDCGCVVDDRVISEECEWRTFTTDSSAPDASRVGRAADSKLSAAAQFNTGVAAAPNGDSSLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVAGVRERALNR 162
            ++C +CG VV DRVI    EWRTF+ D  A DASRVG AA++ L      +T +AA P G+ S  R       ++ + D+ L+  + E+++++D+L   + +  +    F  ++ G +LRG    A+ +A V++AC+Q+   R  KE   V+ + ++ + R
Sbjct:   31 MICPECGLVVGDRVIDVGSEWRTFSNDKDAKDASRVG-AAENSLLDGGDLSTMIAAVPGGEDSGYRNRR----TISSSDRTLISAFKEINQMADRLNLPKMIADRGSTLFKTVHEGKSLRGRSNDAIVSACVYIACRQEGVPRTFKEICAVSKISKKEIGR 186          
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A0G4IK27_PLABS (TFIIB-type domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IK27_PLABS)

HSP 1 Score: 88.2 bits (217), Expect = 9.770e-18
Identity = 61/162 (37.65%), Postives = 92/162 (56.79%), Query Frame = 0
Query:    3 VCRDCGCVVDDRVISEECEWRTFTTDSSA--PDASRVGRAADSKLSAAAQFNTGVAAAPNGDSSLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVAGVRERALNR 162
            VC DCG VV DR+I++E EWRTF++D  A   D +RVG   D+ L    +  TG+AA P+  +S+  K  +SLAS    +K ++ G++E+     ++  S++V  +AKE F +M+    LRG     +  A +F+AC+ Q   R RKE   +  V  R L R
Sbjct:   41 VCTDCGIVVGDRLITDESEWRTFSSDHGAGGDDRNRVG-GPDNPLFEDRELTTGIAADPSNMNSVLGKW-QSLASGRGSEKTIIEGFSEIGEFGHRMDLSDSVQYRAKEIFKQMHETKKLRGRPRNLIVTACLFIACQGQNVDRSRKEFCRITDVDLRDLGR 200          
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A0H5R7B4_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7B4_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 3.080e-14
Identity = 54/162 (33.33%), Postives = 88/162 (54.32%), Query Frame = 0
Query:    3 VCRDCGCVVDDRVISEECEWRTFTTDSSA--PDASRVGRAADSKLSAAAQFNTGVAAAPNGDSSLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVAGVRERALNR 162
            VC DCG V+ DR+I++E EWRTF++D  A   D +R+G   D+ L    +  +G+AA  +   S   K  +S+A+    ++ LL G+AE+     ++  S++V  +AKE F  M+    LRG     +  + +F+AC+ +   R RKE   +  +  R L R
Sbjct:   38 VCVDCGLVLGDRLITDESEWRTFSSDHGAGGDDRNRIG-GPDNPLFEDRELTSGIAADSSNMGSALGKW-QSMAAGRGSERSLLDGFAEIGEFGHRMDLSDSVQLRAKEIFKRMHESKLLRGRNRLLIVTSCLFVACRDENVDRSRKEMCRITDIDLRDLGR 197          
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A1W4XK50_AGRPL (Transcription initiation factor IIB n=2 Tax=Endopterygota TaxID=33392 RepID=A0A1W4XK50_AGRPL)

HSP 1 Score: 73.2 bits (178), Expect = 1.830e-12
Identity = 45/164 (27.44%), Postives = 87/164 (53.05%), Query Frame = 0
Query:    2 VVCRDCGCVVDDRVISEECEWRTFTTDSSAPDASRVGRAADSKLSAA---AQFNTGVAAAPNGDSSLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVAGVRERALNR 162
            ++C +CG VV DRVI    EWRTF+++ S  D SRVG   +  L+ +        G   A   +  +AR   +   ++ + D+ L+  + E++ ++D++     +V +A   F +++ G  L+G    A+ +A +++AC+Q+   R  KE   V+ + ++ + R
Sbjct:    1 MICSECGLVVGDRVIDVGSEWRTFSSEKSGVDPSRVGGPENPLLNGSDLTTMIGPGRGDASFDEFGMARYQNRR--TMSSSDRALINAFKEINSMADRINLPRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 162          
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: L2GT21_VAVCU (TFIIB-type domain-containing protein n=2 Tax=Pleistophoridae TaxID=35232 RepID=L2GT21_VAVCU)

HSP 1 Score: 71.6 bits (174), Expect = 7.970e-12
Identity = 50/162 (30.86%), Postives = 92/162 (56.79%), Query Frame = 0
Query:    2 VVCRDCGCVVDDRVISEECEWRTFTTDSSAPDASRVGRAADSKLSAAAQFNTGVAAAPNGDS-SLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVAGVRERALNR 162
            V+C +CGC++++ +I E+ EWRTF  D SA D SRVG   ++ L  +   +T +A   N  S +L R   KS  ++   ++QL+ G+  +    D+   S+ +  +AK  F  ++    L+G  L  + AA +++AC+Q+++ R  KE +++  V ++ + R
Sbjct:   30 VLCTNCGCIIENTLIDEKTEWRTF--DDSANDPSRVG-CPNNPLLESEPLDTMIANIGNLHSYTLNRTQMKS--TMRGPERQLINGFNLISAYCDRSNISKTISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEVSVLTAVPKKEIGR 186          
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A7R9VQN9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VQN9_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 3.770e-8
Identity = 45/142 (31.69%), Postives = 71/142 (50.00%), Query Frame = 0
Query:    2 VVCRDCGCVVDDRVISEECEWRTFTT-DSSAPDASRVGRAADSKLSAAAQFNT-GVAAAPNGDS-SLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQ 140
            VVCR CG VV + +I E  EWRTF+  D    D +RVG  ++  L  A      G      G+S SL+R HA+S     A D+ ++  +  +  + ++L     +  +A E + E      ++G    A+ A  V+LAC+Q+
Sbjct:   29 VVCRGCGLVVQEHIIDERSEWRTFSDKDKEGTDPNRVGGPSNPLLGGAGLSTVIGKVQGDAGNSFSLSRLHARS-----AQDRNMMAAFKLIGNMCEQLTVVNTIKDRACELYKEAMSTGAMKGKGTQAVAAGCVYLACRQE 165          
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A2A9M9A6_9APIC (Transcription initiation factor IIB n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9M9A6_9APIC)

HSP 1 Score: 58.5 bits (140), Expect = 4.910e-7
Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = 0
Query:    3 VCRDCGCVVDDRVISEECEWRTFTTDSSAP-----DASRVGRAADSKLSAAAQFNTGVAAAPNGD-SSLARKHAKSLASL------------GAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGE-MNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKE 148
            +CR+CG +V+++V+SEE EWR F+ ++++      D +RVG A DS L       T + A+  G  +  A   AK L  L            G+GD+QL   +  +  + +     + V+ +AKE   + M  G+ LR         A ++LAC++    R  KE
Sbjct:  156 LCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNRVGDALDSWLEDGGIGTTMLVASGGGPLAGKAASSAKRLQQLHEATTAGLGSGAGSGDRQLKVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGVQLRTRSNATTMLAIIYLACREAGITRTVKE 320          
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A0D2MAW9_9CHLO (Transcription initiation factor IIB n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MAW9_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 5.630e-7
Identity = 44/141 (31.21%), Postives = 67/141 (47.52%), Query Frame = 0
Query:    2 VVCRDCGCVVDDRVISEECEWRTF-TTDSSAPDASRVGRAADSKLSAAAQFNTGVAAAPNGDSSLA--RKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQ 139
            +VC+ CG VV+D +I E  EWRTF   D    D SRVG A +  L       T      +G +S A  + H +    +    +QL   +A +  +  KL  ++AV + A E +  ++    LRG +     AA V +A +Q
Sbjct:   33 IVCKGCGLVVEDHIIDERSEWRTFGDKDKEGDDPSRVGGATNLLLDDGGLGTTIGRVQGDGGASFALNKMHMRQNNQM----RQLKSAFAGIGEMCSKLNQTDAVKSAACEIYKNVHDNKVLRGRKSELAYAACVLVASRQ 169          
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A7S0R574_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R574_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 7.650e-7
Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 0
Query:    2 VVCRDCGCVVDDRVISEECEWRTFT-TDSSAPDASRVGRAADSKLSAAAQFNTGVAAAPNGDSSLARKHAKSLASL---GAG-DKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVA 153
            ++C +CG V++ R I E  EWRTF+ +D ++ D SRVG   +  L      +T +     GDSS     A +LA L   G+  D+ L+  ++ +  ++D+L     +  +A E + ++    ++RG   +A+ AA +++AC+Q+   R  KE   VA
Sbjct:   33 LICTNCGLVLEARTIDESTEWRTFSNSDGNSQDPSRVGGPTNPLLRDGG-LSTVIG---KGDSS--GSAATALARLQHRGSNPDRNLISAFSAIGEMADRLGLVPTIKDRANENYRDIAEHKSIRGRSASAIHAACLYIACRQEDRPRTFKEICSVA 183          
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: S7UPQ1_TOXGG (Transcription initiation factor IIB n=17 Tax=Toxoplasma gondii TaxID=5811 RepID=S7UPQ1_TOXGG)

HSP 1 Score: 57.8 bits (138), Expect = 8.950e-7
Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = 0
Query:    3 VCRDCGCVVDDRVISEECEWRTFTTDSSAP-----DASRVGRAADSKLSAAAQFNTGVAAAPNGD-SSLARKHAKSLASL------------GAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGE-MNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKE 148
            +CR+CG +V+++V+SEE EWR F+ ++++      D +RVG A D+ L       T + A+  G  +  A   AK L  L            G+GD+QL   +  +  + +     + V+ +AKE   + M  G+ LR    T    A  +LAC++    R  KE
Sbjct:  134 LCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNRVGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGSGVGSGDRQLKVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGVQLRTRSNTTTMLAITYLACREAGVTRTVKE 298          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
V4AYP6_LOTGI6.760e-1832.92Transcription initiation factor IIB n=1 Tax=Lottia... [more]
A0A0G4IK27_PLABS9.770e-1837.65TFIIB-type domain-containing protein n=1 Tax=Plasm... [more]
A0A0H5R7B4_9EUKA3.080e-1433.33Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A1W4XK50_AGRPL1.830e-1227.44Transcription initiation factor IIB n=2 Tax=Endopt... [more]
L2GT21_VAVCU7.970e-1230.86TFIIB-type domain-containing protein n=2 Tax=Pleis... [more]
A0A7R9VQN9_9CHLO3.770e-831.69Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A2A9M9A6_9APIC4.910e-729.70Transcription initiation factor IIB n=1 Tax=Besnoi... [more]
A0A0D2MAW9_9CHLO5.630e-731.21Transcription initiation factor IIB n=1 Tax=Monora... [more]
A0A7S0R574_9CHLO7.650e-730.57Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
S7UPQ1_TOXGG8.950e-729.70Transcription initiation factor IIB n=17 Tax=Toxop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.170coord: 1..162
e-value: 2.1E-29
score: 104.7
NoneNo IPR availablePANTHERPTHR11618:SF13TRANSCRIPTION INITIATION FACTOR IIBcoord: 2..160
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 2..28
IPR013150Transcription factor TFIIB, cyclin-like domainPFAMPF00382TFIIBcoord: 90..158
e-value: 4.7E-7
score: 29.8
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 2..160
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 83..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125944contigM-pyrifera_M_contig125944:1..486 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125944.5241.1mRNA_M-pyrifera_M_contig125944.5241.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig125944 1..501 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig125944.5241.1 ID=prot_M-pyrifera_M_contig125944.5241.1|Name=mRNA_M-pyrifera_M_contig125944.5241.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
MVVCRDCGCVVDDRVISEECEWRTFTTDSSAPDASRVGRAADSKLSAAAQ
FNTGVAAAPNGDSSLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRAS
EAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAA
LVAGVRERALNR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013150TFIIB_cyclin
IPR000812TFIIB
IPR036915Cyclin-like_sf