prot_M-pyrifera_M_contig12521.5098.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig12521.5098.1
Unique Nameprot_M-pyrifera_M_contig12521.5098.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length72
Homology
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 6.540e-26
Identity = 62/83 (74.70%), Postives = 62/83 (74.70%), Query Frame = 0
Query:    1 MALNASPAMTQAPTQAQQGPG-----------NTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 72
            MALNA PAMTQAP Q                 N AIAPYHSASLYVGDLSKDVAEA LFEIFSQVGPVASIRVCRDTVTRRSL
Sbjct:    1 MALNAPPAMTQAPAQGXXXXXXXXXXXXXXXXNAAIAPYHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSL 83          
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: K3X8Z0_GLOUD (Polyadenylate-binding protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X8Z0_GLOUD)

HSP 1 Score: 84.0 bits (206), Expect = 2.980e-17
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    6 SPAMTQAPTQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 72
            SP  + A T A    G  A  P+H+ASLYVGD+  DV EA+LFEIF+ VGPVASIRVCRD VTRRSL
Sbjct:    7 SPTNSPATTAASSATGAAAAQPFHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSL 73          
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: E1ZQ58_CHLVA (Polyadenylate-binding protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQ58_CHLVA)

HSP 1 Score: 83.2 bits (204), Expect = 5.570e-17
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0
Query:   12 APTQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 72
            APT A  G G TA A  H++SLYVGDL +DV EA LFE+FSQ+GPVASIRVCRD VTRRSL
Sbjct:   20 APTAAAPGAG-TAAAATHNSSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSL 79          
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A7S2MJB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MJB4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.600e-17
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 0
Query:    5 ASPAMTQAPTQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 72
            A+P++  A     +GPG TA  P+HSASLYVGDL+ DV E +LFE+F+ VGPV+SIRVCRD VTRRSL
Sbjct:   30 AAPSVPPAMASGGEGPGGTAQ-PFHSASLYVGDLALDVNEGLLFEVFNAVGPVSSIRVCRDAVTRRSL 96          
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A7S2V0G2_9STRA (Polyadenylate-binding protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0G2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.040e-16
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 0
Query:   27 PYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 72
            P+HSASLYVGDL+ DV+EA+LFEIF+ VGPVASIRVCRDTVTRRSL
Sbjct:   11 PFHSASLYVGDLAPDVSEALLFEIFNAVGPVASIRVCRDTVTRRSL 56          
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.040e-16
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0
Query:   25 IAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 72
            + P+HSASLYVGDL+ D+ E+ LFEIF+QVGPVASIRVCRDT+TRRSL
Sbjct:   57 VTPFHSASLYVGDLAPDITESTLFEIFNQVGPVASIRVCRDTITRRSL 104          
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A1Y1I3W0_KLENI (Polyadenylate-binding protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3W0_KLENI)

HSP 1 Score: 82.0 bits (201), Expect = 1.420e-16
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 0
Query:    8 AMTQAPTQAQ---QGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 72
            A  QAP QAQ    GPG +  AP+ S SLYVGDL  +V+EA L+E+F+QVGPV SIRVCRD +TRRSL
Sbjct:    2 AQVQAPPQAQGAQAGPGGSGPAPFASTSLYVGDLEANVSEAQLYEVFNQVGPVVSIRVCRDLITRRSL 69          
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A448ZJB9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJB9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.940e-16
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0
Query:   12 APTQAQQGPG-NTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 72
            AP   Q GPG +   AP+HSASLYVGDL  D  E +LFEIF+ VGPVASIRVCRD VTRRSL
Sbjct:   22 APVPGQAGPGGDEGPAPFHSASLYVGDLVPDANEGLLFEIFNAVGPVASIRVCRDAVTRRSL 83          
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A507FFP4_9FUNG (Polyadenylate-binding protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FFP4_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 3.620e-16
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0
Query:   14 TQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 72
            T+AQ  PG   IAP   +SLYVG+L   V EA+LFE+FS VGPVASIRVCRDT+TRRSL
Sbjct:   28 TEAQLPPGGVVIAPTPQSSLYVGELDPSVTEAMLFELFSMVGPVASIRVCRDTITRRSL 86          
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A7S2RU94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RU94_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.990e-16
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0
Query:   21 GNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 72
            G T + P+HSASLYVGDL+ +V E +LFEIF+ VGPV+SIRVCRD VTRRSL
Sbjct:   39 GGTTVQPFHSASLYVGDLAPEVNEGLLFEIFNAVGPVSSIRVCRDAVTRRSL 90          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI6.540e-2674.70Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
K3X8Z0_GLOUD2.980e-1764.18Polyadenylate-binding protein n=2 Tax=Pythiaceae T... [more]
E1ZQ58_CHLVA5.570e-1772.13Polyadenylate-binding protein n=1 Tax=Chlorella va... [more]
A0A7S2MJB4_9STRA5.600e-1763.24Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2V0G2_9STRA1.040e-1684.78Polyadenylate-binding protein n=2 Tax=Fibrocapsa j... [more]
A0A835YVH9_9STRA1.040e-1677.08Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A1Y1I3W0_KLENI1.420e-1663.24Polyadenylate-binding protein n=1 Tax=Klebsormidiu... [more]
A0A448ZJB9_9STRA1.940e-1669.35Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A507FFP4_9FUNG3.620e-1667.80Polyadenylate-binding protein n=2 Tax=Chytriomyces... [more]
A0A7S2RU94_9STRA4.990e-1671.15Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 33..71
e-value: 5.9E-8
score: 32.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 31..72
score: 8.945
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..72
e-value: 4.0E-12
score: 48.3
NoneNo IPR availablePANTHERPTHR15241:SF16POLYADENYLATE-BINDING PROTEINcoord: 25..72
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 25..72
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 10..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12521contigM-pyrifera_M_contig12521:3967..6206 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12521.5098.1mRNA_M-pyrifera_M_contig12521.5098.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig12521 3967..6841 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig12521.5098.1 ID=prot_M-pyrifera_M_contig12521.5098.1|Name=mRNA_M-pyrifera_M_contig12521.5098.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MALNASPAMTQAPTQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEI
FSQVGPVASIRVCRDTVTRRSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf