prot_M-pyrifera_M_contig125103.5089.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig125103.5089.1
Unique Nameprot_M-pyrifera_M_contig125103.5089.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length156
Homology
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BLAST of mRNA_M-pyrifera_M_contig125103.5089.1 vs. uniprot
Match: A0A0A9WJT9_LYGHE (Rho GTPase-activating protein 27 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WJT9_LYGHE)

HSP 1 Score: 58.9 bits (141), Expect = 2.650e-7
Identity = 55/187 (29.41%), Postives = 77/187 (41.18%), Query Frame = 0 
Query:    1 AASDWREIRKEGQ-RTFYYNKKTKERRWDRPKEMDAKEDVGGGDVGGVSGVSSAAGAESEWEVKQDPKSGRRFYRNKRTGAKQWDAPREL-----------AQSGTVG-------------------GAAPASGGAGSAAGAKEEESEWKEMVDKRSGRVFYFNRRTQVKQWKKPKELEDKGGGESG 156
            A SDW  +  +   RT+YYNK TK  +W +P+    +         G +           W   +DPKSGR +Y NK T +  W  P  L           AQ GT G                    +AP S    +  G K     W E  D R+ R +++NR T+   WK+P EL+D  G ++G
Sbjct:    8 AMSDWTSVLDQTSGRTYYYNKVTKVTQWTKPEGYVERSSNSPVAASGANPEDDTENNPMYWNTVKDPKSGRTYYYNKVTKSTSWKMPDCLSSSSVPPQPLAAQQGTAGYPTAPLGLPQNVAVDGTSSPSAPISPIHSNTGGDK-----WAEATDPRTNRKYWYNRITRETTWKRPAELDDTSGSDTG 189
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125103.5089.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0A9WJT9_LYGHE2.650e-729.41Rho GTPase-activating protein 27 (Fragment) n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 55..88
e-value: 3.2E-5
score: 33.4
coord: 113..146
e-value: 8.0E-4
score: 28.7
coord: 2..32
e-value: 0.52
score: 19.0
IPR001202WW domainPFAMPF00397WWcoord: 116..144
e-value: 2.6E-9
score: 37.0
coord: 58..86
e-value: 2.8E-6
score: 27.3
coord: 3..30
e-value: 4.8E-7
score: 29.8
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 1..32
score: 12.176
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 112..146
score: 11.743
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 54..88
score: 11.014
NoneNo IPR availableGENE3D2.20.70.10coord: 110..153
e-value: 3.5E-10
score: 41.0
NoneNo IPR availableGENE3D2.20.70.10coord: 48..101
e-value: 6.5E-8
score: 34.0
coord: 1..41
e-value: 1.1E-9
score: 39.7
NoneNo IPR availablePANTHERPTHR11864:SF0PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST)coord: 2..91
coord: 52..150
IPR039726Pre-mRNA-processing factor Prp40PANTHERPTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40coord: 2..91
coord: 52..150
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 3..33
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 53..88
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 113..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125103contigM-pyrifera_M_contig125103:26..493 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125103.5089.1mRNA_M-pyrifera_M_contig125103.5089.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig125103 26..493 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig125103.5089.1 ID=prot_M-pyrifera_M_contig125103.5089.1|Name=mRNA_M-pyrifera_M_contig125103.5089.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
AASDWREIRKEGQRTFYYNKKTKERRWDRPKEMDAKEDVGGGDVGGVSGV
SSAAGAESEWEVKQDPKSGRRFYRNKRTGAKQWDAPRELAQSGTVGGAAP
ASGGAGSAAGAKEEESEWKEMVDKRSGRVFYFNRRTQVKQWKKPKELEDK
GGGESG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR039726Prp40-like
IPR036020WW_dom_sf