prot_M-pyrifera_M_contig12423.4937.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig12423.4937.1
Unique Nameprot_M-pyrifera_M_contig12423.4937.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length245
Homology
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BLAST of mRNA_M-pyrifera_M_contig12423.4937.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 1.910e-87
Identity = 127/182 (69.78%), Postives = 156/182 (85.71%), Query Frame = 0 
Query:   63 MKFGVNVSAPFIGMKRDEGSDYPYAKHYCVRRSDRGTRVLVVQEMAEEPQGGSSLPEGKLVHVLEGTGHLEA-ALATKAGLVTRLKATVDGHAYRLGDFVLRVGSCRKGAIYRGLALEVEYTPCCRVADGLAMIEAFLPSIDEDGTFAPTSNLRDPTTFGSNPQFSVKHTALQITDLFNKVF 243
            MK GVN++APF+GMK++EG +YP+AK +C+RR+DRGTRV+VVQEMAEEP   +++PEGKL HVLEG   LEA   A +AGLVTR+KA+++GHAYRLGDFV+RVG C+KGA++RGLALEVEY PC RVADGL+MIEAF+PSID+DGTF   S+L+D   FG  PQFSVKH ALQITDLFN+VF
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRRNDRGTRVMVVQEMAEEPSY-AAVPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTFTAVSDLQDLAMFGRGPQFSVKHNALQITDLFNEVF 181
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BLAST of mRNA_M-pyrifera_M_contig12423.4937.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.060e-35
Identity = 74/147 (50.34%), Postives = 92/147 (62.59%), Query Frame = 0 
Query:   63 MKFGVNVSAPFIGM-KRDEGSDYPYAKHYCVRRSDRGTRVLVVQEMAEEPQGGSSLPEGKLVHVLEGTGHLEAALATKAGLVTRLKATVDGHAYRLGDFVLRVGSCRKGAIYRGLALEVEYTPCCRVADGLAMIEAFLPSIDEDGTF 208
            M+FGVN +  FIG   R + + YP+ +   VRRSD   RV +VQEM +            L  VL G   LEA +A K    TRLKA ++G A+ LGDF +RVG+CRKG+ YRGLA+EVEY PC  V DG AMIEA LP++D  GTF
Sbjct:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRA--------ATLEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTF 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig12423.4937.1 vs. uniprot
Match: UPI0019395F48 (mediator of RNA polymerase II transcription subunit 20-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019395F48)

HSP 1 Score: 52.8 bits (125), Expect = 8.190e-5
Identity = 32/95 (33.68%), Postives = 51/95 (53.68%), Query Frame = 0 
Query:  147 KATVDGHAYRLGDFVLRVGSCRKGAIYRGLALEVEYTPCCRVADGLAMIEAFLPSIDEDGTFAPTS-NLRDPTTFGSNPQFSVKHTALQITDLFN 240
            K    GH Y L DF+ ++G    G+  RG+A+E+EYTPC  V +   ++     +I   G  APTS N        ++  ++ +HT+LQ  ++FN
Sbjct:  103 KIECKGHRYILNDFLFKIGVVTHGSNTRGIAVEIEYTPCLYVKECWNLLLEIFQNIL--GPQAPTSENPLFQKLKSTDIIYTAEHTSLQYIEVFN 195
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12423.4937.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI1.910e-8769.78Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z8G4_9STRA1.060e-3550.34Mediator of RNA polymerase II transcription subuni... [more]
UPI0019395F488.190e-533.68mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 143..206
e-value: 7.5E-10
score: 38.5
IPR013921Mediator complex, subunit Med20PANTHERPTHR12465UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49coord: 141..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12423contigM-pyrifera_M_contig12423:2386..6056 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12423.4937.1mRNA_M-pyrifera_M_contig12423.4937.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig12423 2333..6231 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig12423.4937.1 ID=prot_M-pyrifera_M_contig12423.4937.1|Name=mRNA_M-pyrifera_M_contig12423.4937.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=245bp
MAHRAPVCCVFGKPVAQEGSLEAIRSLEQHIVHVLGAESLDRWTIEVTYK
LKQKKKKAMGSEMKFGVNVSAPFIGMKRDEGSDYPYAKHYCVRRSDRGTR
VLVVQEMAEEPQGGSSLPEGKLVHVLEGTGHLEAALATKAGLVTRLKATV
DGHAYRLGDFVLRVGSCRKGAIYRGLALEVEYTPCCRVADGLAMIEAFLP
SIDEDGTFAPTSNLRDPTTFGSNPQFSVKHTALQITDLFNKVFV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20