prot_M-pyrifera_M_contig123990.4899.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig123990.4899.1
Unique Nameprot_M-pyrifera_M_contig123990.4899.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length173
Homology
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Match: F4QED3_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QED3_CAVFA)

HSP 1 Score: 115 bits (289), Expect = 8.800e-27
Identity = 71/178 (39.89%), Postives = 106/178 (59.55%), Query Frame = 0
Query:    1 LSRRLSGEAVKFTKEEEALIFALTDELEVVHLLPNLCDQVKDLAAELRTRIIAGDRSKWVMSTEEQSRHEEDSKGKKETLEDALKYLQDPLLPVRAQGLVALRKLVLD-----RDQSVVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDVRPKKVIPILTEYFSKEGSSIETK 173
            LS  LSGE VK  KEEE L++ L   LE +   PN  D V  ++++L+T II   +  W M + +       S    + L++ L  L  PLLPVRA GL+ LR+LVL       + ++V  N+DN++T+FKTQL D D+++Y  +INGL+++GD+ P  +IPIL + F +   + E K
Sbjct:  753 LSTMLSGE-VKVRKEEEILVYDLVGCLEQLSQHPN--DIVSVMSSQLKT-IIDVKKPTWSMGSSDNDSSSSSSVNPNDKLKEILDDLSHPLLPVRAHGLIELRRLVLSMRSNKNNDNIVKRNLDNIITIFKTQLNDDDTFIYTCSINGLSSIGDIYPNDIIPILIDQFKETNKNKEEK 926          
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Match: D3BLW1_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BLW1_POLPP)

HSP 1 Score: 114 bits (286), Expect = 2.210e-26
Identity = 75/173 (43.35%), Postives = 108/173 (62.43%), Query Frame = 0
Query:    1 LSRRLSGEAVKFTKEEEALIFALTDELEVVHLLPNLCDQVKDLAAELRTRIIAGDRSKWVMSTEEQSR-----HEEDSKGK-KETLEDALKYLQDPLLPVRAQGLVALRKLVLDRDQS-VVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDVRPKKVIPILTEYFSKE 166
            LS  L+G+ +K  KEEE L+F L   LE +   PN  + +  +A++L+T II   +  W+ +           + ED K K KE LED    L  PLLP+RA GL+ LRKLVL   QS ++ +N++N++ +FKTQ+ D D+++Y  AINGLTALGD+ P K+IPILT  F+ +
Sbjct:  738 LSSLLTGD-IKVKKEEEILVFDLLTPLEQLMSYPN--EIISTMASQLKT-IITAKQPIWLDNNNXXXXXXXXXNVEDVKSKLKEILED----LSHPLLPIRAHGLIELRKLVLQSKQSELIHKNLENIIEIFKTQINDDDTFIYSCAINGLTALGDIYPVKIIPILTAQFNNQ 902          
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Match: A0A8J4V1E0_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V1E0_9MYCE)

HSP 1 Score: 114 bits (285), Expect = 3.030e-26
Identity = 67/163 (41.10%), Postives = 103/163 (63.19%), Query Frame = 0
Query:    1 LSRRLSGEAVKFTKEEEALIFALTDELEVVHLLPNLCDQVKDLAAELRTRIIAGDRSKWVMSTEEQSRHEEDSKGKKETLEDALKYLQDPLLPVRAQGLVALRKLVLDRDQSVVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDVRPKKVIPILTEYF 163
            L+  L+GE +K  KEEE +IF L    E +   PN  + +  +A++++T I A    K +    + +   ED+   +  L++ L  L  PLLPVRA GL+ LR++VL +  S++D+N+DNVL +FKTQL D D+++YG +I GL ALGD+ P ++IP+L E F
Sbjct:  753 LTTLLTGE-IKVRKEEEIVIFDLLSLTEQLCYHPN--EMIATMASQIKTIITA---KKPIWMDHDNTGATEDTSDSQSKLKEILADLSHPLLPVRAHGLIELRRMVLSKS-SLIDKNLDNVLNIFKTQLGDDDTFIYGCSIAGLAALGDIYPTRIIPLLVEQF 908          
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Match: L8GQF6_ACACA (HEAT repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQF6_ACACA)

HSP 1 Score: 112 bits (279), Expect = 1.880e-25
Identity = 77/173 (44.51%), Postives = 104/173 (60.12%), Query Frame = 0
Query:    1 LSRRLSGEAVKFTKEEEALIFALTDELEVVHLLPNLCDQVKDLAAELRTRIIAGDRSKWVMSTEEQSRHEEDSKGKKETLEDALKYLQDPLLPVRAQGLVALRKLVLDRDQSVVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDVRPKKVIPILTEYFSKEGSSIETK 173
            LS  LSG+ +K  + E  L+  L   L  +   P   + +  LA EL  RIIA DRS +  ST E    E  S  +K+ +E  L  L+DPLLPVRAQ LVALRKLVL +D+     N D +L +F+TQL DSDSY+Y  A+ GL ALGD+ P+++IP+L + F  E    +T+
Sbjct:  554 LSALLSGQKIKLNQAESILLLDLLPFLGELKDHPE--EHISTLATELHVRIIARDRSWFSDSTTET---ETPSLFRKD-VEQILAELRDPLLPVRAQALVALRKLVLAKDE-FARANRDKILDIFQTQLRDSDSYLYYAAMRGLGALGDIFPEEIIPVLVKSFLDESLIEDTR 719          
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Match: F0ZY85_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZY85_DICPU)

HSP 1 Score: 107 bits (266), Expect = 4.820e-24
Identity = 64/168 (38.10%), Postives = 108/168 (64.29%), Query Frame = 0
Query:    1 LSRRLSGEAVKFTKEEEALIFALTDELEVVHLLPNLCDQVKDLAAELRTRIIAGDRSKWVMSTEEQSRHEED-----SKGKKETLEDALKYLQDPLLPVRAQGLVALRKLVLDRDQSVVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDVRPKKVIPILTEYF 163
            L+  L+GE +   K+EE ++F L   +E +    N  + +  +A++++T I A    K +  T++Q   E D     +K + + L++ LK L DPLLP+RA  L+ LRK+VL +   ++++N++NVL +FKTQ+ D D++VYG +INGL+ALGD+ P +++PIL + F
Sbjct:  124 LTTLLTGE-ITVRKDEEIIVFDLLTLVEQLSYHSN--EIISTMASQIKTIITA---KKPIWLTDQQQDGEGDDHLTTAKEQGDKLKEILKDLSDPLLPIRAHALIQLRKMVLSKS-GLIEQNLNNVLEIFKTQIGDDDTFVYGVSINGLSALGDIYPTRILPILIDSF 284          
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Match: A0A151Z996_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z996_9MYCE)

HSP 1 Score: 107 bits (267), Expect = 7.860e-24
Identity = 74/177 (41.81%), Postives = 107/177 (60.45%), Query Frame = 0
Query:    1 LSRRLSGEAVKFTKEEEALIFALTDELEVVHLLPNLCDQVKDLAAELRTRIIAGDRSKW---VMSTEEQSRHEEDSKGKKET-LEDALKYLQDPLLPVRAQGLVALRKLVLDRDQSVVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDVRPKKVIPILTEYFSKEGSSIETK 173
            LS  L G+ VK  K EE LIF L   +E + L P+    +  ++ +++T II   +  W   +      +    DS G  E  L++ LK L DPLLP+R+ GL+ LR LVL + + V++ N+ NVL +FK+QLAD DS+VYG ++NGL+ALGD+ P  +IP+L E F  +  S ETK
Sbjct:  702 LSSLLLGD-VKVKKSEEILIFDLLPLIEQMSLHPDTL--ISSMSEQIKT-IITVKKPTWLEDIQCDNSSNSTGNDSIGDDEDKLKEILKNLSDPLLPIRSHGLIELRSLVLTKSK-VIERNLMNVLDVFKSQLADEDSFVYGCSVNGLSALGDIYPDLIIPLLIESFQTQTFS-ETK 872          
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Match: Q54Y12_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54Y12_DICDI)

HSP 1 Score: 99.8 bits (247), Expect = 2.250e-21
Identity = 62/174 (35.63%), Postives = 105/174 (60.34%), Query Frame = 0
Query:    1 LSRRLSGEAVKFTKEEEALIFALTDELEVVHLLPNLCDQVKDLAAELRTRIIAGDRSKWVMSTEEQ-----------SRHEEDSKGKKETLEDALKYLQDPLLPVRAQGLVALRKLVLDRDQSVVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDVRPKKVIPILTEYF 163
            L+  L+GE +K  K+EE +IF L   +E +    N  + +  +A++++T II   +  W+++               S +E+ +K     L++ L  L  PLLP+RA  L+ LR+LVL +   ++++N+ NVL +FKTQ+ D D+++YG +INGL+ALGD+ P +++PIL E F
Sbjct:  125 LTTLLTGE-IKVRKDEEIIIFDLLSLVEQLSYHSN--EMISTMASQIKT-IITAKKPIWLINDNNXXXSNXXXXXXXSPNEQGNK-----LKEILNDLSHPLLPIRAHALIELRRLVLSKS-GLIEQNLKNVLEIFKTQVNDDDTFIYGCSINGLSALGDIYPNRILPILIESF 288          
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Match: UPI001CFC8ABA (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFC8ABA)

HSP 1 Score: 90.1 bits (222), Expect = 7.950e-18
Identity = 44/89 (49.44%), Postives = 67/89 (75.28%), Query Frame = 0
Query:   84 LKYLQDPLLPVRAQGLVALRKLVLDR-DQSVVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDVRPKKVIPILTEYFSKEGSSIE 171
            L+ L+DPLLPVRA G++ALR LVL++ + +++++ + N+  + ++QL D D+YVY  AI+GLTALGDV P  +IPIL + FS +  +IE
Sbjct:  404 LQDLRDPLLPVRAHGVIALRDLVLEKKNNTLIEKQIKNIFDILQSQLKDEDTYVYLGAISGLTALGDVYPDTIIPILVDTFSDKRQAIE 492          
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Match: A0A6A5C448_NAEFO (RTP1_C1 domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C448_NAEFO)

HSP 1 Score: 87.0 bits (214), Expect = 9.940e-17
Identity = 41/89 (46.07%), Postives = 67/89 (75.28%), Query Frame = 0
Query:   84 LKYLQDPLLPVRAQGLVALRKLVLDRDQS-VVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDVRPKKVIPILTEYFSKEGSSIE 171
            L+ L+DPLLPVRA G+++LR++VL++ ++ ++++ + N+  + ++QL D D+YVY  AI+GLTALGDV P  +IPIL + F  +  +IE
Sbjct:  699 LQDLRDPLLPVRAHGVLSLREIVLEKKKNPIIEKQVHNIFDILQSQLKDEDTYVYLGAISGLTALGDVYPDTIIPILVDTFGDKKQTIE 787          
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Match: A0A6B2L3M9_9EUKA (RTP1_C1 domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L3M9_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 1.180e-15
Identity = 59/163 (36.20%), Postives = 89/163 (54.60%), Query Frame = 0
Query:    1 LSRRLSGEAVKFTKEEEALIFALTDELEVVHLLPNLCDQVKDLAAELRTRIIAGDRSKWVMSTEEQSRHEEDSKGKKETLEDALKYLQDPLLPVRAQGLVALRKLVLDRDQSVVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDVRPKKVIPILTEYF 163
            L+  LSG  V+  KEEE +I+ L D L  +    N   Q+   A +L  +I   D        +E+  H  +S    ET ++ +K +QDPLLPVRA GL+++R+LVL +D     +N+D +L L + Q  D D Y+Y  AI   +A+GDV   K +P+L +  
Sbjct:  115 LAALLSG-VVEIKKEEEIIIYDLLDRLNELKSHSNT--QIIQTATDLYDKIYKRDGWTSEKLHQEKKFHFSESD---ETFKNIMKDIQDPLLPVRAHGLISIRRLVLSKDPYFY-KNVDAILELLENQCYDDDDYIYLGAIAAFSAIGDVLIDKALPLLGQIL 270          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123990.4899.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F4QED3_CAVFA8.800e-2739.89Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
D3BLW1_POLPP2.210e-2643.35Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A8J4V1E0_9MYCE3.030e-2641.10Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
L8GQF6_ACACA1.880e-2544.51HEAT repeat domain containing protein n=1 Tax=Acan... [more]
F0ZY85_DICPU4.820e-2438.10Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A151Z996_9MYCE7.860e-2441.81Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
Q54Y12_DICDI2.250e-2135.63Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
UPI001CFC8ABA7.950e-1849.44uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5C448_NAEFO9.940e-1746.07RTP1_C1 domain-containing protein n=1 Tax=Naegleri... [more]
A0A6B2L3M9_9EUKA1.180e-1536.20RTP1_C1 domain-containing protein (Fragment) n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019451RNA polymerase II assembly factor Rtp1, C-terminalPFAMPF10363RTP1_C1coord: 81..171
e-value: 5.4E-25
score: 87.7
IPR039600TANGO6/Rtp1PANTHERPTHR20959UNCHARACTERIZEDcoord: 5..165
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 73..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123990contigM-pyrifera_M_contig123990:2..520 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123990.4899.1mRNA_M-pyrifera_M_contig123990.4899.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig123990 2..520 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig123990.4899.1 ID=prot_M-pyrifera_M_contig123990.4899.1|Name=mRNA_M-pyrifera_M_contig123990.4899.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
LSRRLSGEAVKFTKEEEALIFALTDELEVVHLLPNLCDQVKDLAAELRTR
IIAGDRSKWVMSTEEQSRHEEDSKGKKETLEDALKYLQDPLLPVRAQGLV
ALRKLVLDRDQSVVDENMDNVLTLFKTQLADSDSYVYGHAINGLTALGDV
RPKKVIPILTEYFSKEGSSIETK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019451Rtp1_C1
IPR039600TANGO6/Rtp1
IPR016024ARM-type_fold