prot_M-pyrifera_M_contig123970.4892.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig123970.4892.1
Unique Name	prot_M-pyrifera_M_contig123970.4892.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	129

Homology

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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A7M7RH90_STRPU (40S ribosomal protein S18 n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7RH90_STRPU)

HSP 1 Score: 187 bits (476), Expect = 6.430e-59
Identity = 88/128 (68.75%), Postives = 113/128 (88.28%), Query Frame = 0

Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 128
             +++ALTAIKGVGRR+A   CR ADI+ +KRAGELTDDE++KL+TILQ+P Q++IP WFLNRQ D++DGK  Q+ +N LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   26 KIMYALTAIKGVGRRYANICCRKADIDVSKRAGELTDDEVEKLMTILQNPRQYKIPDWFLNRQMDVKDGKYGQMMANNLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 153

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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: UPI0014256AE1 (40S ribosomal protein S18 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014256AE1)

HSP 1 Score: 187 bits (475), Expect = 8.840e-59
Identity = 86/128 (67.19%), Postives = 114/128 (89.06%), Query Frame = 0

Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 128
             ++FA+TAIKG+GRR+A   C+ AD++ +KRAGELT+DE+ KLVTI+Q+P Q++IP WFLNRQRDI+DGK +Q+ +N LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   25 KIMFAMTAIKGIGRRYANLCCKKADVDLSKRAGELTEDEVDKLVTIMQNPRQYKIPDWFLNRQRDIKDGKFSQVLANALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: E3PQX3_MICSQ (40S ribosomal protein S18 n=3 Tax=Ascidiacea TaxID=7713 RepID=E3PQX3_MICSQ)

HSP 1 Score: 186 bits (473), Expect = 1.780e-58
Identity = 85/128 (66.41%), Postives = 113/128 (88.28%), Query Frame = 0

Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 128
             +++A+TA+KGVGRRF+  +C+ AD++  KRAGELTDDEI ++VTI+Q+P Q++IP WFLNRQ+D++DGK +Q+ SN LDN LRED +RM+KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   25 KIMYAMTAVKGVGRRFSNLICKKADVDLTKRAGELTDDEIDRVVTIMQNPRQYKIPDWFLNRQKDVKDGKFSQVLSNQLDNKLREDTERMKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: UPI000180C23B (40S ribosomal protein S18 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=UPI000180C23B)

HSP 1 Score: 186 bits (472), Expect = 2.530e-58
Identity = 86/128 (67.19%), Postives = 113/128 (88.28%), Query Frame = 0

Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 128
            ++ FALTAIKG+GRRF+  +C+ AD++  KRAGEL+DDEI ++VTI+Q+P Q++IP WFLNRQ+D+RDGK  Q+ SN LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   25 HIAFALTAIKGIGRRFSTLVCKKADVDLTKRAGELSDDEIDRIVTIMQNPRQYKIPDWFLNRQKDVRDGKFGQILSNQLDNKLREDIERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A5M9MRF8_9EURO (Ribosomal 40S subunit protein S18B n=8 Tax=Aspergillus TaxID=5052 RepID=A0A5M9MRF8_9EURO)

HSP 1 Score: 186 bits (472), Expect = 2.790e-58
Identity = 86/128 (67.19%), Postives = 116/128 (90.62%), Query Frame = 0

Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 128
             +++ALT IKGVGRR++  +C+ AD++ +KRAGELT +E++++VTILQ+PTQ++IPTWFLNRQRDI DGK++Q+ SN LD+ LRED++R++KIRSHRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   27 KIMYALTQIKGVGRRYSNLVCKKADVDLSKRAGELTTEELERVVTILQNPTQYKIPTWFLNRQRDITDGKDSQVLSNGLDSKLREDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 154

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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A3F3RVL6_ASPNG (Uncharacterized protein n=8 Tax=Aspergillus TaxID=5052 RepID=A0A3F3RVL6_ASPNG)

HSP 1 Score: 185 bits (470), Expect = 5.620e-58
Identity = 85/128 (66.41%), Postives = 115/128 (89.84%), Query Frame = 0

Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 128
             +++ALT IKGVGRR++  +C+ AD++ +KRAGELT +E++++VTILQ PTQ++IPTWFLNRQRDI DGK++Q+ SN LD+ +RED++R++KIRSHRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   27 KIMYALTQIKGVGRRYSNLVCKKADVDLSKRAGELTTEELERIVTILQSPTQYKIPTWFLNRQRDITDGKDSQVVSNSLDSKIREDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 154

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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A3N4L0Z4_9PEZI (Ribosomal protein S13 n=2 Tax=Morchella TaxID=5193 RepID=A0A3N4L0Z4_9PEZI)

HSP 1 Score: 185 bits (470), Expect = 5.620e-58
Identity = 85/128 (66.41%), Postives = 115/128 (89.84%), Query Frame = 0

Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 128
             V++ALT IKGVGRR++  +C+ AD++  KRAGELT +E++++VTI+Q+PTQ++IPTWFLNRQRDI DGK+TQ+ +N LDN +RED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   27 KVMYALTKIKGVGRRYSNLVCKKADVDLNKRAGELTTEELERIVTIIQNPTQYKIPTWFLNRQRDIVDGKDTQILANALDNKMREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 154

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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A3P8YST4_ESOLU (40S ribosomal protein S18 n=3 Tax=Clupeocephala TaxID=186625 RepID=A0A3P8YST4_ESOLU)

HSP 1 Score: 184 bits (466), Expect = 1.940e-57
Identity = 85/128 (66.41%), Postives = 114/128 (89.06%), Query Frame = 0

Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 128
             + FA+TAIKGVGRR+A  + R ADI+ +KRAGELTDDE++++VTI+Q+P Q++IP WFLNRQ+D++DGK +Q+ +N LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   23 KIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTDDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 150

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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A6P6RFD6_CARAU (40S ribosomal protein S18 n=31 Tax=Gnathostomata TaxID=7776 RepID=A0A6P6RFD6_CARAU)

HSP 1 Score: 184 bits (466), Expect = 2.070e-57
Identity = 86/128 (67.19%), Postives = 113/128 (88.28%), Query Frame = 0

Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 128
             + FA+TAIKGVGRR+A  + R ADI+  KRAGELTDDE++++VTI+Q+P Q++IP WFLNRQ+DI+DGK +Q+ +N LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   25 KIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTDDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: RS18_BRABE (40S ribosomal protein S18 n=4 Tax=Bilateria TaxID=33213 RepID=RS18_BRABE)

HSP 1 Score: 184 bits (466), Expect = 2.070e-57
Identity = 82/128 (64.06%), Postives = 116/128 (90.62%), Query Frame = 0

Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 128
             ++FALT+IKGVGRR++  +C+ ADI+ +KRAGEL+D+E+++L+TI+Q+P Q++IP WFLNRQ+D++DGK +Q+ +N LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   25 KIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7M7RH90_STRPU	6.430e-59	68.75	40S ribosomal protein S18 n=2 Tax=Echinacea TaxID=...	[more]
UPI0014256AE1	8.840e-59	67.19	40S ribosomal protein S18 n=1 Tax=Anneissia japoni...	[more]
E3PQX3_MICSQ	1.780e-58	66.41	40S ribosomal protein S18 n=3 Tax=Ascidiacea TaxID...	[more]
UPI000180C23B	2.530e-58	67.19	40S ribosomal protein S18 n=1 Tax=Ciona intestinal...	[more]
A0A5M9MRF8_9EURO	2.790e-58	67.19	Ribosomal 40S subunit protein S18B n=8 Tax=Aspergi...	[more]
A0A3F3RVL6_ASPNG	5.620e-58	66.41	Uncharacterized protein n=8 Tax=Aspergillus TaxID=...	[more]
A0A3N4L0Z4_9PEZI	5.620e-58	66.41	Ribosomal protein S13 n=2 Tax=Morchella TaxID=5193...	[more]
A0A3P8YST4_ESOLU	1.940e-57	66.41	40S ribosomal protein S18 n=3 Tax=Clupeocephala Ta...	[more]
A0A6P6RFD6_CARAU	2.070e-57	67.19	40S ribosomal protein S18 n=31 Tax=Gnathostomata T...	[more]
RS18_BRABE	2.070e-57	64.06	40S ribosomal protein S18 n=4 Tax=Bilateria TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.50		coord: 1..56 e-value: 1.8E-19 score: 71.5
None	No IPR available	PANTHER	PTHR10871:SF3	40S RIBOSOMAL PROTEIN S18	coord: 3..128
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 3..128
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 2..118 e-value: 2.7E-44 score: 150.6
IPR001892	Ribosomal protein S13	PIRSF	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 1..128 e-value: 1.6E-32 score: 110.1
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 1..121 score: 29.419
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10		coord: 68..119 e-value: 5.4E-24 score: 85.8
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 97..110
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 2..128

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig123970	contig	M-pyrifera_M_contig123970:135..521 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig123970.4892.1	mRNA_M-pyrifera_M_contig123970.4892.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig123970 135..521 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig123970.4892.1 ID=prot_M-pyrifera_M_contig123970.4892.1|Name=mRNA_M-pyrifera_M_contig123970.4892.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHP
TQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIR
HAYGLKVRGQHTKTTGRRGRTVGVAKKK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001892	Ribosomal_S13
IPR027437	30s_Rbsml_prot_S13_C
IPR018269	Ribosomal_S13_CS
IPR010979	Ribosomal_S13-like_H2TH