prot_M-pyrifera_M_contig123527.4809.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig123527.4809.1
Unique Nameprot_M-pyrifera_M_contig123527.4809.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length174
Homology
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A7S1T4K8_9RHOD (Splicing factor U2AF subunit n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4K8_9RHOD)

HSP 1 Score: 113 bits (283), Expect = 3.690e-26
Identity = 70/176 (39.77%), Postives = 102/176 (57.95%), Query Frame = 0
Query:    1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAP-SRVLALLNAVSLDDVKDDRKHGEIVE 174
            G + T +PDGPNKVF+GG+P H+++ Q+ EL    G L  F++++D N G  KGFGF EYA+P+V D AC KL+ ++LG   L  RR+         A  A          V S+++NL+ LG PV +S  A  A  +   +P  PL P + +L L N VS D+++DD +  +I E
Sbjct:  282 GIVSTQVPDGPNKVFIGGIPYHLTEDQIKELLQSFGPLAAFNLIKDSNTGLSKGFGFFEYADPSVIDIACEKLNEMQLGRNKLTVRRA---------ATSAAXXXXXXXXGVGSSLSNLMPLGGPVLTSSIASAANAIATTSPATPLRPPTAILQLENMVSEDELRDDDEFADIQE 448          
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A8K1C271_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C271_PYTOL)

HSP 1 Score: 110 bits (275), Expect = 4.960e-25
Identity = 66/177 (37.29%), Postives = 103/177 (58.19%), Query Frame = 0
Query:    1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGL-PVASSLAAVRAPGVDEAAPGGPLA-PSRVLALLNAVSLDDVKDDRKHGEIVE 174
            G + T++ D P+K+F+GG+P H++D QV EL    G L+ F +V++ N    KG+GF EY +P VTD AC  L+ ++LGDKTL  RR+M             Q  A+       +V + L++GL P  ++L  +   G     P  PL  PSRV+ LLN V+ D+++DD ++ +I++
Sbjct:  321 GIVSTTVQDSPHKIFVGGIPYHLNDDQVKELLQAFGPLKSFHLVKELNTNMSKGYGFCEYLDPNVTDAACIGLNDMKLGDKTLTVRRAMS------------QENAKAVASAAGSVNSGLSMGLDPTTAALQTISMAGFGLGIPSAPLGNPSRVIVLLNMVTADELEDDEEYNDILD 485          
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A066W2Z9_TILAU (Uncharacterized protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066W2Z9_TILAU)

HSP 1 Score: 110 bits (275), Expect = 6.570e-25
Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 0
Query:    1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDH-NGACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARR----SMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 174
            G + T++PD PNK+F+GGLP +++D+QVMEL    G LR F++VR+  NG  KGF F EY +P++TD AC+ L+ + LGD+ L+ +R    S K + GG   A  P+G A        +                     GV  AA      P+R + +LN V+ D++ DD+++ EIVE
Sbjct:  432 GVVSTNVPDSPNKIFIGGLPTYLNDEQVMELLKAFGELRAFNLVREQGNGPSKGFAFCEYVDPSITDLACQGLNDMELGDRRLVVQRASLGSGKGNAGGTPVAAPPRGIAAXXXXXXXSFVG------------------GVGGAAAEEAGEPTRCMQMLNMVTQDELTDDQEYSEIVE 592          
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A5C3EHI4_9BASI (Related to pre-mRNA splicing factor U2AF large chain n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EHI4_9BASI)

HSP 1 Score: 109 bits (273), Expect = 1.200e-24
Identity = 65/175 (37.14%), Postives = 101/175 (57.71%), Query Frame = 0
Query:    1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 174
            G + T++PD P+K+F+GGLP +++D QV+EL    G LR F++V+D   GA KGF F EY + A+TD AC+ L+G+ LGD+ L+ +R             A  G  + A+ + +T AN   LG  V SSL      G D   P      +  + +LN V+ ++++DD ++ +IVE
Sbjct:  443 GVISTNVPDSPHKIFVGGLPTYLNDDQVIELLQAFGELRAFNLVKDTGTGASKGFAFCEYVDTALTDLACQGLNGMELGDRNLVVQR-------------ASVGSEKKAQAIAATGANAGTLGSAVPSSLQQFAGEGGDAGEP------TSCMVMLNMVTPEELQDDEEYADIVE 598          
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A316YZD0_9BASI (Uncharacterized protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316YZD0_9BASI)

HSP 1 Score: 109 bits (272), Expect = 1.440e-24
Identity = 65/175 (37.14%), Postives = 102/175 (58.29%), Query Frame = 0
Query:    1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDH-NGACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 174
            G + T++PDGPNK+++GGLP ++ D+QV+EL    G LR F++VR++ NGA KG+ F EY + A+T+ AC  L+ + LGD+ L+ +R+  + +  R       G  QP           L L LPVA++               GP  P+R + +LN V+ D++ DD ++GEI+E
Sbjct:  345 GVISTNVPDGPNKIYVGGLPTYLQDEQVIELLKAFGELRAFNLVRENGNGASKGYAFCEYVDAALTEVACAGLNDMELGDRRLVVQRASMSLD--RRPMPTTVGGGQP-----------LGLALPVAAA---------------GPAEPTRAMMMLNMVTPDELLDDVEYGEILE 491          
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A0K3CPQ8_RHOTO (BY PROTMAP: gi|472585603|gb|EMS23154.1| splicing factor U2AF 65 kDa subunit [Rhodosporidium toruloides NP11] gi|647400712|emb|CDR46411.1| RHTO0S12e04170g1_1 [Rhodosporidium toruloides] n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CPQ8_RHOTO)

HSP 1 Score: 109 bits (272), Expect = 1.460e-24
Identity = 74/180 (41.11%), Postives = 103/180 (57.22%), Query Frame = 0
Query:    1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQG-----PAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 174
            G + T++PD  NK+F+GGLP++++D QVMEL    G LR F++V++   GA KGF F EY +PAVTD AC+ L+G+ LGD+ L+ +R   A  G   A   P G     P  P   +         L  P AS LAA           GG   P+RVL +LN VS+D++ +D+ + EIVE
Sbjct:  369 GVVSTNVPDTVNKIFIGGLPSYLTDDQVMELLKSFGELRAFNLVKEGGTGASKGFAFCEYVDPAVTDIACQGLNGMELGDRYLVVQR---AAIGANPAKHGPPGSGIGFPDMPPGAIPG-------LNQPPASILAAGE---------GGEGQPTRVLQVLNMVSVDELANDQDYEEIVE 529          
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: R9P966_PSEHS (Splicing factor, subunit n=1 Tax=Pseudozyma hubeiensis (strain SY62) TaxID=1305764 RepID=R9P966_PSEHS)

HSP 1 Score: 107 bits (268), Expect = 5.630e-24
Identity = 65/176 (36.93%), Postives = 103/176 (58.52%), Query Frame = 0
Query:    1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLG-LPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 174
            G + T++PD P+K+F+GGLP +++D QV+EL    G LR F++V+D   GA KGF F EY +PA+TD AC+ L+G+ LGD+ L+ +R             A  G  + A+ + +T AN  +LG   V SS+      G D   P      +  + +LN V+ ++++DD ++ +IVE
Sbjct:  447 GVISTNVPDSPHKIFVGGLPTYLTDDQVIELLQAFGELRAFNLVKDTGTGASKGFAFCEYVDPALTDLACQGLNGMELGDRNLVVQR-------------ASVGSEKKAQAIAATGANAGSLGGAAVPSSVQKFAGEGGDAGEP------TSCMVMLNMVTPEELQDDEEYADIVE 603          
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A2S5BFF7_9BASI (Uncharacterized protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BFF7_9BASI)

HSP 1 Score: 107 bits (266), Expect = 9.370e-24
Identity = 66/175 (37.71%), Postives = 104/175 (59.43%), Query Frame = 0
Query:    1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 174
            G + T++PD  NK+F+GGLP++++D+QVMEL    G LR F++V++   GA KGF F EY +P VT+ AC+ L+G+ LGD+ L+ +R+ +  +GG+       G   P      + A       P AS +A+ +  G           P+RVL +LN VS+D++ +D+ + EIVE
Sbjct:  365 GVVSTNVPDTVNKIFVGGLPSYLNDEQVMELLKSFGELRAFNLVKEGGTGASKGFAFCEYVDPNVTEVACQGLNGMELGDRFLVVQRA-QIGQGGQRIGGPGMGSDMPGXXXXQSTA-------PPASIMASAQGEGE----------PTRVLQILNMVSVDELTNDQDYEEIVE 521          
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A180H444_PUCT1 (Uncharacterized protein n=2 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A180H444_PUCT1)

HSP 1 Score: 107 bits (266), Expect = 1.010e-23
Identity = 64/177 (36.16%), Postives = 98/177 (55.37%), Query Frame = 0
Query:    1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHNGA---CKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 174
            G + T++PD PNK+F+GGLP++++D QVMEL    G L+ F++V+D +      KGF F EY +P +TD AC+ L+G+ LGD+ L+ +R+       +     P G             N  N     A   A   A  V  A  GG    +RVL +LN V+ +++ DD+++GEI+E
Sbjct:  397 GVVSTNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVSKGFAFCEYVDPDLTDIACQGLNGMELGDRYLVVQRAQIGQNAKKEKENNPDGQR-----------NNYNQFNTFAGGQATAAASSVLAAVKGGEGEKTRVLQMLNMVNQEELVDDQEYGEILE 562          
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A0D1CHB4_USTMA (Uncharacterized protein n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1CHB4_USTMA)

HSP 1 Score: 107 bits (266), Expect = 1.050e-23
Identity = 65/176 (36.93%), Postives = 103/176 (58.52%), Query Frame = 0
Query:    1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLG-LPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 174
            G + T++PD P+K+F+GGLP +++D QV+EL    G LR F++V+D   GA KGF F EY +PA+TD AC+ L+G+ LGD+ L+ +R             A  G  + A+ + +T AN+  LG   V SS+      G D   P      +  + +LN V+ ++++DD ++ +IVE
Sbjct:  451 GVISTNVPDSPHKIFVGGLPTYLNDDQVIELLQAFGELRAFNLVKDTGTGASKGFAFCEYVDPALTDLACQGLNGMELGDRNLVVQR-------------ASVGSEKKAQALAATGANMGALGGAAVPSSVQKFAGDGGDAGEP------TTCMVMLNMVTPEELQDDEEYADIVE 607          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1T4K8_9RHOD3.690e-2639.77Splicing factor U2AF subunit n=1 Tax=Compsopogon c... [more]
A0A8K1C271_PYTOL4.960e-2537.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A066W2Z9_TILAU6.570e-2537.43Uncharacterized protein n=1 Tax=Tilletiaria anomal... [more]
A0A5C3EHI4_9BASI1.200e-2437.14Related to pre-mRNA splicing factor U2AF large cha... [more]
A0A316YZD0_9BASI1.440e-2437.14Uncharacterized protein n=1 Tax=Tilletiopsis washi... [more]
A0A0K3CPQ8_RHOTO1.460e-2441.11BY PROTMAP: gi|472585603|gb|EMS23154.1| splicing f... [more]
R9P966_PSEHS5.630e-2436.93Splicing factor, subunit n=1 Tax=Pseudozyma hubeie... [more]
A0A2S5BFF7_9BASI9.370e-2437.71Uncharacterized protein n=1 Tax=Rhodotorula taiwan... [more]
A0A180H444_PUCT11.010e-2336.16Uncharacterized protein n=2 Tax=Puccinia triticina... [more]
A0A0D1CHB4_USTMA1.050e-2336.93Uncharacterized protein n=1 Tax=Ustilago maydis (s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 13..85
e-value: 1.0E-12
score: 58.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 14..82
e-value: 8.6E-11
score: 41.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 12..89
score: 13.771
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 63..82
e-value: 5.9E-19
score: 70.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 9..62
e-value: 5.9E-19
score: 70.5
NoneNo IPR availablePANTHERPTHR23139RNA-BINDING PROTEINcoord: 6..174
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 7..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123527contigM-pyrifera_M_contig123527:2..523 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123527.4809.1mRNA_M-pyrifera_M_contig123527.4809.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig123527 2..523 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig123527.4809.1 ID=prot_M-pyrifera_M_contig123527.4809.1|Name=mRNA_M-pyrifera_M_contig123527.4809.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHNGA
CKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARA
PQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSR
VLALLNAVSLDDVKDDRKHGEIVE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf