prot_M-pyrifera_M_contig122952.4715.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig122952.4715.1
Unique Nameprot_M-pyrifera_M_contig122952.4715.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length121
Homology
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Match: UPI001929C350 (DNA topoisomerase 3-beta-like n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929C350)

HSP 1 Score: 143 bits (360), Expect = 1.010e-40
Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 0
Query:    5 VLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARFVVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAE--KGSMVRHIQQSAAGAHFLVLWLDCDREGENIC 121
            VLMVAEKPSIA ++A+AL+GG   +H+    VHE+ G F GF   + VTSV GH+FS DFPP YQN E  DP+ L+ APVLK     K  + RH+ Q A G  +LVLWLDCDREGENIC
Sbjct:    5 VLMVAEKPSIALSIASALAGGRMSTHKSSTDVHEFDGTFMGFDVHYKVTSVIGHVFSLDFPPSYQNWEVTDPMDLFQAPVLKSESNPKAHIHRHLSQEARGCGYLVLWLDCDREGENIC 123          
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Match: A0A2U1Q1B1_ARTAN (DNA topoisomerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1Q1B1_ARTAN)

HSP 1 Score: 137 bits (345), Expect = 1.160e-38
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 0
Query:    1 MVVTVLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARFVVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAE--KGSMVRHIQQSAAGAHFLVLWLDCDREGENIC 121
            M   VLMVAEKPSIA ++A ALSGG   S R    VHE+ G F G+R ++ VTSV GH+FS DFPP+YQ+    DP+TL+ APV+K     K  + +H+ + A G   LVLWLDCDREGENIC
Sbjct:    1 MATKVLMVAEKPSIALSIATALSGGRMSSRRGSTEVHEFDGTFLGYRVQYKVTSVIGHVFSVDFPPKYQDWAATDPLTLFEAPVVKSESNPKAHIRQHLNREARGCGDLVLWLDCDREGENIC 123          
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Match: A0A3P6AXE7_BRAOL (DNA topoisomerase n=1 Tax=Brassica oleracea TaxID=3712 RepID=A0A3P6AXE7_BRAOL)

HSP 1 Score: 134 bits (338), Expect = 4.380e-38
Identity = 64/119 (53.78%), Postives = 81/119 (68.07%), Query Frame = 0
Query:    5 VLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARFVVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAE--KGSMVRHIQQSAAGAHFLVLWLDCDREGENIC 121
            VLMVAEKPSIA ++A  LS G+  + R    VHE+ G FRGF+A + VTSV GH+FS DFP +YQN   +DP  L+ AP+ K+    K  + RH+   A G  ++VLWLDCDREGENIC
Sbjct:    7 VLMVAEKPSIALSIATVLSHGQMSTRRGSTEVHEFDGMFRGFKAHYRVTSVIGHVFSVDFPEKYQNWSTIDPQDLFDAPIQKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGENIC 125          
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Match: A0A699IS67_TANCI (DNA topoisomerase (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IS67_TANCI)

HSP 1 Score: 137 bits (345), Expect = 7.130e-38
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 0
Query:    1 MVVTVLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARFVVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAE--KGSMVRHIQQSAAGAHFLVLWLDCDREGENIC 121
            M   VLMVAEKPSIA ++A ALSGG   S R    VHE+ G F G+R ++ VTSV GH+FS DFPP+YQ+    DP+TL+ APV+K     K  + +H+ + A G   LVLWLDCDREGENIC
Sbjct:   29 MATKVLMVAEKPSIALSIATALSGGRMSSRRGSTEVHEFDGTFLGYRVQYKVTSVIGHVFSVDFPPKYQDWAATDPLTLFEAPVVKSESNPKAHIRQHLNREARGCGDLVLWLDCDREGENIC 151          
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Match: A0A1J4MI51_9CRYT (DNA topoisomerase n=1 Tax=Cryptosporidium ubiquitum TaxID=857276 RepID=A0A1J4MI51_9CRYT)

HSP 1 Score: 144 bits (364), Expect = 9.510e-38
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 0
Query:    3 VTVLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARFVVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAEKGSMVRHIQQSAAGAHFLVLWLDCDREGENIC 121
            + VLMVAEKPSI+ T++  LS G+  + R   PVHE++G+FRG   +F VTSVAGH+F T+FP  Y N EK DPV+L+ AP++K      M+ H+++ + G  +LVLWLDCDREGENIC
Sbjct:    4 IKVLMVAEKPSISDTISKILSNGKLVTRRAKTPVHEFNGNFRGMNVQFKVTSVAGHVFETNFPQSYSNWEKTDPVSLFDAPIIKNESSSKMISHLEKESKGCSYLVLWLDCDREGENIC 122          
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Match: A0A8B7C6T9_PHODC (DNA topoisomerase n=5 Tax=Arecaceae TaxID=4710 RepID=A0A8B7C6T9_PHODC)

HSP 1 Score: 144 bits (364), Expect = 9.760e-38
Identity = 72/119 (60.50%), Postives = 83/119 (69.75%), Query Frame = 0
Query:    5 VLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARFVVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAE--KGSMVRHIQQSAAGAHFLVLWLDCDREGENIC 121
            VLMVAEKPSIA +VA+ALSGG   + R    VHE+ G FRG  A F VTSV GH+FS DFPP YQN E  DP+ L+ AP+LK     K  + RH+ Q A G  +LVLWLDCDREGENIC
Sbjct:    5 VLMVAEKPSIALSVASALSGGRMSTRRGSTDVHEFDGMFRGLHAHFKVTSVIGHVFSVDFPPTYQNWEVTDPMDLFQAPILKSESNPKAHIRRHLSQEAKGCGYLVLWLDCDREGENIC 123          
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Match: A0A6I9RI61_ELAGV (DNA topoisomerase n=4 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9RI61_ELAGV)

HSP 1 Score: 144 bits (364), Expect = 9.770e-38
Identity = 72/119 (60.50%), Postives = 83/119 (69.75%), Query Frame = 0
Query:    5 VLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARFVVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAE--KGSMVRHIQQSAAGAHFLVLWLDCDREGENIC 121
            VLMVAEKPSIA ++A+ALSGG   + R    VHE+ G FRG  A F VTSV GHIFS DFPP YQN E  DP+ L+ AP+LK     K  + RH+ Q A G  +LVLWLDCDREGENIC
Sbjct:    5 VLMVAEKPSIALSIASALSGGRMSTRRGSTDVHEFDGMFRGLHAHFKVTSVIGHIFSVDFPPTYQNWEVTDPMDLFQAPILKSESNPKAHIRRHLSQEAKGCGYLVLWLDCDREGENIC 123          
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Match: A0A835V3K0_VANPL (DNA topoisomerase n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V3K0_VANPL)

HSP 1 Score: 144 bits (363), Expect = 1.330e-37
Identity = 71/123 (57.72%), Postives = 87/123 (70.73%), Query Frame = 0
Query:    1 MVVTVLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARFVVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAE--KGSMVRHIQQSAAGAHFLVLWLDCDREGENIC 121
            MV  VLMVAEKPSIA ++A+ALS G   + R    VHE+ G F+G +A F VTSV GH++S DFPP+YQN +  DP+ L+ APVLK     KG + RH+ Q A G  +LVLWLDCDREGENIC
Sbjct:    1 MVHKVLMVAEKPSIAVSIASALSNGRMSTRRGSTDVHEFDGTFQGNQAHFKVTSVTGHVYSVDFPPKYQNWDLTDPIDLFQAPVLKLESNPKGHICRHLSQEARGCTYLVLWLDCDREGENIC 123          
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Match: UPI0018ADECA9 (DNA topoisomerase 3-beta n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADECA9)

HSP 1 Score: 143 bits (360), Expect = 3.390e-37
Identity = 70/119 (58.82%), Postives = 83/119 (69.75%), Query Frame = 0
Query:    5 VLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARFVVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAE--KGSMVRHIQQSAAGAHFLVLWLDCDREGENIC 121
            VLMVAEKPSIA ++A+ALSGG   + +    VHE+ G FRGF   + VTSV GH+FS DFPP YQN E  DP+ L+ APVLK     K  + RH+ Q A G  +LVLWLDCDREGENIC
Sbjct:    5 VLMVAEKPSIALSIASALSGGRMSTRKSSTDVHEFDGTFRGFDVHYKVTSVIGHVFSLDFPPTYQNWEVTDPMDLFQAPVLKSESNPKAHIRRHLSQEARGCGYLVLWLDCDREGENIC 123          
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Match: L1JH36_GUITC (DNA topoisomerase n=4 Tax=Guillardia theta TaxID=55529 RepID=L1JH36_GUITC)

HSP 1 Score: 142 bits (359), Expect = 4.390e-37
Identity = 72/119 (60.50%), Postives = 85/119 (71.43%), Query Frame = 0
Query:    3 VTVLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARFVVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAEKGSMVRHIQQSAAGAHFLVLWLDCDREGENIC 121
            VTV+MVAEKPSI   +A ALSGG  E+     PVH +  +F G  A F VTSV GH+FSTDFP  YQ+ +KVDPVTL+ APV K+AEK  +V  +Q    GA +LVLWLDCDREGENIC
Sbjct:    2 VTVVMVAEKPSICNAIAIALSGGNHETKGGTPPVHTFRSNFMGSSALFKVTSVVGHVFSTDFPSAYQSWDKVDPVTLFDAPVEKKAEKKGVVHLLQNEGKGADYLVLWLDCDREGENIC 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122952.4715.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001929C3501.010e-4057.98DNA topoisomerase 3-beta-like n=2 Tax=Dioscorea ca... [more]
A0A2U1Q1B1_ARTAN1.160e-3855.28DNA topoisomerase n=1 Tax=Artemisia annua TaxID=35... [more]
A0A3P6AXE7_BRAOL4.380e-3853.78DNA topoisomerase n=1 Tax=Brassica oleracea TaxID=... [more]
A0A699IS67_TANCI7.130e-3855.28DNA topoisomerase (Fragment) n=1 Tax=Tanacetum cin... [more]
A0A1J4MI51_9CRYT9.510e-3853.78DNA topoisomerase n=1 Tax=Cryptosporidium ubiquitu... [more]
A0A8B7C6T9_PHODC9.760e-3860.50DNA topoisomerase n=5 Tax=Arecaceae TaxID=4710 Rep... [more]
A0A6I9RI61_ELAGV9.770e-3860.50DNA topoisomerase n=4 Tax=Elaeis guineensis var. t... [more]
A0A835V3K0_VANPL1.330e-3757.72DNA topoisomerase n=2 Tax=Vanilla planifolia TaxID... [more]
UPI0018ADECA93.390e-3758.82DNA topoisomerase 3-beta n=1 Tax=Dioscorea cayenne... [more]
L1JH36_GUITC4.390e-3760.50DNA topoisomerase n=4 Tax=Guillardia theta TaxID=5... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006171TOPRIM domainSMARTSM00493toprim5coord: 4..121
e-value: 3.9E-5
score: 33.1
IPR006171TOPRIM domainPFAMPF01751Toprimcoord: 5..120
e-value: 1.2E-15
score: 57.6
IPR006171TOPRIM domainPROSITEPS50880TOPRIMcoord: 4..121
score: 14.606
NoneNo IPR availableGENE3D3.40.50.140coord: 1..121
e-value: 6.2E-36
score: 126.0
NoneNo IPR availablePANTHERPTHR11390:SF20DNA TOPOISOMERASE 3-BETA-1coord: 1..121
IPR000380DNA topoisomerase, type IAPANTHERPTHR11390PROKARYOTIC DNA TOPOISOMERASEcoord: 1..121
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 4..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122952contigM-pyrifera_M_contig122952:163..525 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122952.4715.1mRNA_M-pyrifera_M_contig122952.4715.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig122952 163..525 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig122952.4715.1 ID=prot_M-pyrifera_M_contig122952.4715.1|Name=mRNA_M-pyrifera_M_contig122952.4715.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MVVTVLMVAEKPSIAATVANALSGGEFESHRHGMPVHEYSGDFRGFRARF
VVTSVAGHIFSTDFPPEYQNREKVDPVTLYAAPVLKRAEKGSMVRHIQQS
AAGAHFLVLWLDCDREGENIC
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006171TOPRIM_domain
IPR000380Topo_IA
IPR023405Topo_IA_core_domain