prot_M-pyrifera_M_contig12293.4708.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig12293.4708.1
Unique Nameprot_M-pyrifera_M_contig12293.4708.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length42
Homology
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BLAST of mRNA_M-pyrifera_M_contig12293.4708.1 vs. uniprot
Match: D8LPP9_ECTSI (CCCH-type Zn finger-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPP9_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.460e-14
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 0 
Query:    1 QGYNCLFRHSQAALASGTVCRFWQNGFCKDAANCSFQHPASG 42
            +G NCLFRHS+AA ASG VCRFWQNGFCKD  NC F HP  G
Sbjct:   83 KGNNCLFRHSEAARASGIVCRFWQNGFCKDDVNCPFLHPVRG 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12293.4708.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPP9_ECTSI1.460e-1473.81CCCH-type Zn finger-containing protein n=2 Tax=Ect... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 15..40
e-value: 9.9E-4
score: 28.4
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 14..41
score: 12.22
IPR041686Zinc-finger CCCH domainPFAMPF15663zf-CCCH_3coord: 2..38
e-value: 5.2E-10
score: 39.5
NoneNo IPR availableGENE3D4.10.1000.10coord: 14..42
e-value: 3.6E-6
score: 28.9
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 18..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12293contigM-pyrifera_M_contig12293:8758..8883 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12293.4708.1mRNA_M-pyrifera_M_contig12293.4708.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig12293 8758..8883 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig12293.4708.1 ID=prot_M-pyrifera_M_contig12293.4708.1|Name=mRNA_M-pyrifera_M_contig12293.4708.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
QGYNCLFRHSQAALASGTVCRFWQNGFCKDAANCSFQHPASG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR041686Znf-CCCH_3
IPR036855Znf_CCCH_sf