prot_M-pyrifera_M_contig122715.4665.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig122715.4665.1
Unique Nameprot_M-pyrifera_M_contig122715.4665.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length165
Homology
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BLAST of mRNA_M-pyrifera_M_contig122715.4665.1 vs. uniprot
Match: UPI00159F9F6A (TetR/AcrR family transcriptional regulator n=1 Tax=Parasphingopyxis sp. CP4 TaxID=2724527 RepID=UPI00159F9F6A)

HSP 1 Score: 82.0 bits (201), Expect = 4.220e-16
Identity = 47/163 (28.83%), Postives = 82/163 (50.31%), Query Frame = 0 
Query:    1 LIGRKEAIVVAMYAETVDELARRIRQLDGGDPRLQVESLITVVAGLFAENEAYARAAVIAVEQLNYTESSRARVAHFYQWGEGVVTDGCRACGEAGLLRGQIDPALLGAQIFHTFLRNIRAWAYGHMNLDEFRRTGLIDVRIGLAADAVDTFRKRLARDIDSL 163
            LIG K+A+++A+    V  +  ++   +      Q E+++     +FA++E + RAA+IA EQ+ +    R       +    +  + CRA    GLLRG ID  +LG+Q++  +   +  W +  +++ EFR   L    + LAADA   F   L + I+ L
Sbjct:   53 LIGSKDAVLMALVERAVVRIEEQLEDFESAPAIDQAEAVVIQSTDIFADDENFYRAAMIAGEQVGFHSRERLDAHWIDERSTQMAANACRAGLREGLLRGTIDSDMLGSQMYAIYRTCLHDWVHQRISIAEFRHNALQGFYVCLAADATPEFHAELVKKIEQL 215
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122715.4665.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00159F9F6A4.220e-1628.83TetR/AcrR family transcriptional regulator n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.357.10coord: 2..159
e-value: 8.5E-10
score: 41.4
IPR036271Tetracyclin repressor-like, C-terminal domain superfamilySUPERFAMILY48498Tetracyclin repressor-like, C-terminal domaincoord: 30..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122715contigM-pyrifera_M_contig122715:3..497 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122715.4665.1mRNA_M-pyrifera_M_contig122715.4665.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig122715 3..497 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig122715.4665.1 ID=prot_M-pyrifera_M_contig122715.4665.1|Name=mRNA_M-pyrifera_M_contig122715.4665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
LIGRKEAIVVAMYAETVDELARRIRQLDGGDPRLQVESLITVVAGLFAEN
EAYARAAVIAVEQLNYTESSRARVAHFYQWGEGVVTDGCRACGEAGLLRG
QIDPALLGAQIFHTFLRNIRAWAYGHMNLDEFRRTGLIDVRIGLAADAVD
TFRKRLARDIDSLAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036271Tet_transcr_reg_TetR-rel_C_sf