prot_M-pyrifera_M_contig122509.4632.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig122509.4632.1
Unique Nameprot_M-pyrifera_M_contig122509.4632.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length70
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig122509.4632.1 vs. uniprot
Match: A0A6H5JFI1_9PHAE (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.480e-17
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0 
Query:    1 MNKAVHFKTHGKPFGVTSVVVPAGTKGFLYVEAMNEPAVRAALNGLRGV 49
            MNKA+ FK +G+PFGVTS VVPAGTKGFLY+EA NEPAV+AA+NGLRGV
Sbjct:   31 MNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGV 79
[Close]
BLAST of mRNA_M-pyrifera_M_contig122509.4632.1 vs. uniprot
Match: D7FI29_ECTSI (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.030e-17
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 0 
Query:    1 MNKAVHFKTHGKPFGVTSVVVPAGTKGFLYVEAMNEPAVRAALNGLRGV 49
            MNKA+ FK +G+PFGVTS VVPAGTKGFLY+EA NEPAV+AA+NGLRG+
Sbjct:  179 MNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGI 227
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122509.4632.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFI1_9PHAE1.480e-1779.59Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
D7FI29_ECTSI2.030e-1777.55Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005100NGN domainPFAMPF03439Spt5-NGNcoord: 1..50
e-value: 1.9E-8
score: 34.1
IPR036735NusG, N-terminal domain superfamilyGENE3D3.30.70.940coord: 1..62
e-value: 6.0E-10
score: 40.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122509contigM-pyrifera_M_contig122509:181..390 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122509.4632.1mRNA_M-pyrifera_M_contig122509.4632.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig122509 166..390 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig122509.4632.1 ID=prot_M-pyrifera_M_contig122509.4632.1|Name=mRNA_M-pyrifera_M_contig122509.4632.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MNKAVHFKTHGKPFGVTSVVVPAGTKGFLYVEAMNEPAVRAALNGLRGVS
FFFLSWLEVSYVKNRRFDT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005100NGN-domain
IPR036735NGN_dom_sf