prot_M-pyrifera_M_contig122435.4628.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig122435.4628.1
Unique Nameprot_M-pyrifera_M_contig122435.4628.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length50
Homology
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BLAST of mRNA_M-pyrifera_M_contig122435.4628.1 vs. uniprot
Match: A0A2A4RED2_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RED2_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.050e-9
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0 
Query:    1 MVEMPDWFSDATTIPLLNAQADGILLTPSPSSLALLAFGGLTATRRRR 48
            +++MP+WF          +Q DGILLTP+P S++LLA GGL ATRRRR
Sbjct:  176 LIQMPEWFDTTNGFDNRTSQGDGILLTPTPGSVSLLALGGLAATRRRR 223
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122435.4628.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2A4RED2_9BACT2.050e-954.17Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013424PEP-CTERM protein-sorting domainTIGRFAMTIGR02595TIGR02595coord: 28..48
e-value: 0.003
score: 16.3
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..23
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122435contigM-pyrifera_M_contig122435:369..518 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122435.4628.1mRNA_M-pyrifera_M_contig122435.4628.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig122435 369..527 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig122435.4628.1 ID=prot_M-pyrifera_M_contig122435.4628.1|Name=mRNA_M-pyrifera_M_contig122435.4628.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
MVEMPDWFSDATTIPLLNAQADGILLTPSPSSLALLAFGGLTATRRRRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013424PEP_exosort_dom