prot_M-pyrifera_M_contig122160.4564.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig122160.4564.1
Unique Name	prot_M-pyrifera_M_contig122160.4564.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	122

Homology

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BLAST of mRNA_M-pyrifera_M_contig122160.4564.1 vs. uniprot
Match: UPI001C8BCD0D (glycerophosphoryl diester phosphodiesterase membrane domain-containing protein n=1 Tax=Actinotalea ferrariae TaxID=1386098 RepID=UPI001C8BCD0D)

HSP 1 Score: 62.0 bits (149), Expect = 9.490e-9
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = 0

Query:   13 WSAGWRRFFPMIGMLIIY---VLIIGSIVVVG--GLITAGIAMLSKWLGILFGIALYIGIFYLAIRFYYTIPLVTSREHGVFRSFGESWRLSRGYFWRLLGM 109
            WS  WRR   ++G+ ++Y   VL++  + + G   L  AG + L+  +G+L GI L++   +L++R     P++      V+ S    WRL+RG FWRLLG+
Sbjct:  275 WSQHWRRVLALVGLSVLYGLAVLLVVGLFIAGVVALAAAGQSGLATLVGVLGGIGLFVASIWLSVRLLLVAPVLVLEREPVWASVARGWRLTRGSFWRLLGI 376

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BLAST of mRNA_M-pyrifera_M_contig122160.4564.1 vs. uniprot
Match: UPI001F486194 (glycerophosphoryl diester phosphodiesterase membrane domain-containing protein n=1 Tax=Actinotalea solisilvae TaxID=2072922 RepID=UPI001F486194)

HSP 1 Score: 52.8 bits (125), Expect = 9.810e-6
Identity = 34/104 (32.69%), Postives = 56/104 (53.85%), Query Frame = 0

Query:   13 WSAGWRRFFPMIGMLIIYVLIIGSIVVVGGLI-------TAGIAMLSKWLGILFGIALYIGIFYLAIRFYYTIPLVTSREHGVFRSFGESWRLSRGYFWRLLGM 109
            WS  W+R   ++G+ ++Y L+  + +V+G L+        AG +      G++ G+A ++   +LAIR     P++      V+ S    WRLSRG FWRLLG+
Sbjct:   31 WSKHWKRVLALVGLSVLYGLV--ATLVLGLLVXXXXXXAAAGQSXXXXXXGLVGGLAAFVASVWLAIRLLLVPPVLVLEGLPVWASVARGWRLSRGSFWRLLGI 132

[Close]

BLAST of mRNA_M-pyrifera_M_contig122160.4564.1 vs. uniprot
Match: UPI001FB26322 (glycerophosphoryl diester phosphodiesterase membrane domain-containing protein n=1 Tax=Curtobacterium sp. VKM Ac-2922 TaxID=2929475 RepID=UPI001FB26322)

HSP 1 Score: 51.2 bits (121), Expect = 5.610e-5
Identity = 32/104 (30.77%), Postives = 58/104 (55.77%), Query Frame = 0

Query:   13 WSAGWRRFFPMIGMLIIYVLIIGSIVVVGGLITA--GIAMLSKWLGIL-FGIALYIGIFYLAIRFYYTIPLVTSREHGVFRSFGESWRLSRGYFWRLLGMMFFV 113
            WS  W     +   +++ VL +  +V + G ++A  G  + +  LGI+   + L++ + +L+ RF +T+P +     GVF +  +SWRL+RG FWR  G++  V
Sbjct:  197 WSVVWWILLQLAAGIVVAVLFLLVVVGLVGAVSANSGGTIAAFVLGIIGMALGLFVLLAFLSTRFAFTVPTIALEGRGVFAAAAQSWRLTRGAFWRTFGILLLV 300

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig122160.4564.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig122160.4564.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
UPI001C8BCD0D	9.490e-9	34.31	glycerophosphoryl diester phosphodiesterase membra...	[more]
UPI001F486194	9.810e-6	32.69	glycerophosphoryl diester phosphodiesterase membra...	[more]
UPI001FB26322	5.610e-5	30.77	glycerophosphoryl diester phosphodiesterase membra...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018476	Glycerophosphoryl diester phosphodiesterase, membrane domain	PFAM	PF10110	GPDPase_memb	coord: 52..121 e-value: 4.8E-10 score: 38.7
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 122..122
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 44..54
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 55..76
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 102..121
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 77..101
None	No IPR available	TMHMM	TMhelix		coord: 54..76
None	No IPR available	TMHMM	TMhelix		coord: 27..49
None	No IPR available	TMHMM	TMhelix		coord: 102..121

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig122160	contig	M-pyrifera_M_contig122160:26..391 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig122160.4564.1	mRNA_M-pyrifera_M_contig122160.4564.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig122160 26..391 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig122160.4564.1 ID=prot_M-pyrifera_M_contig122160.4564.1|Name=mRNA_M-pyrifera_M_contig122160.4564.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
VLNNDESKIRGAWSAGWRRFFPMIGMLIIYVLIIGSIVVVGGLITAGIAM
LSKWLGILFGIALYIGIFYLAIRFYYTIPLVTSREHGVFRSFGESWRLSR
GYFWRLLGMMFFVLGATSLLFI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018476	GlyceroP-diester-Pdiesterase_M