mRNA_M-pyrifera_M_contig122160.4564.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122160.4564.1
Unique NamemRNA_M-pyrifera_M_contig122160.4564.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122160.4564.1 vs. uniprot
Match: UPI001C8BCD0D (glycerophosphoryl diester phosphodiesterase membrane domain-containing protein n=1 Tax=Actinotalea ferrariae TaxID=1386098 RepID=UPI001C8BCD0D)

HSP 1 Score: 62.0 bits (149), Expect = 9.490e-9
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:   37 WSAGWRRFFPMIGMLIIY---VLIIGSIVVVG--GLITAGIAMLSKWLGILFGIALYIGIFYLAIRFYYTIPLVTSREHGVFRSFGESWRLSRGYFWRLLGM 327
            WS  WRR   ++G+ ++Y   VL++  + + G   L  AG + L+  +G+L GI L++   +L++R     P++      V+ S    WRL+RG FWRLLG+
Sbjct:  275 WSQHWRRVLALVGLSVLYGLAVLLVVGLFIAGVVALAAAGQSGLATLVGVLGGIGLFVASIWLSVRLLLVAPVLVLEREPVWASVARGWRLTRGSFWRLLGI 376
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BLAST of mRNA_M-pyrifera_M_contig122160.4564.1 vs. uniprot
Match: UPI001F486194 (glycerophosphoryl diester phosphodiesterase membrane domain-containing protein n=1 Tax=Actinotalea solisilvae TaxID=2072922 RepID=UPI001F486194)

HSP 1 Score: 52.8 bits (125), Expect = 9.810e-6
Identity = 34/104 (32.69%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:   37 WSAGWRRFFPMIGMLIIYVLIIGSIVVVGGLI-------TAGIAMLSKWLGILFGIALYIGIFYLAIRFYYTIPLVTSREHGVFRSFGESWRLSRGYFWRLLGM 327
            WS  W+R   ++G+ ++Y L+  + +V+G L+        AG +      G++ G+A ++   +LAIR     P++      V+ S    WRLSRG FWRLLG+
Sbjct:   31 WSKHWKRVLALVGLSVLYGLV--ATLVLGLLVXXXXXXAAAGQSXXXXXXGLVGGLAAFVASVWLAIRLLLVPPVLVLEGLPVWASVARGWRLSRGSFWRLLGI 132
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BLAST of mRNA_M-pyrifera_M_contig122160.4564.1 vs. uniprot
Match: UPI001FB26322 (glycerophosphoryl diester phosphodiesterase membrane domain-containing protein n=1 Tax=Curtobacterium sp. VKM Ac-2922 TaxID=2929475 RepID=UPI001FB26322)

HSP 1 Score: 51.2 bits (121), Expect = 5.610e-5
Identity = 32/104 (30.77%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   37 WSAGWRRFFPMIGMLIIYVLIIGSIVVVGGLITA--GIAMLSKWLGIL-FGIALYIGIFYLAIRFYYTIPLVTSREHGVFRSFGESWRLSRGYFWRLLGMMFFV 339
            WS  W     +   +++ VL +  +V + G ++A  G  + +  LGI+   + L++ + +L+ RF +T+P +     GVF +  +SWRL+RG FWR  G++  V
Sbjct:  197 WSVVWWILLQLAAGIVVAVLFLLVVVGLVGAVSANSGGTIAAFVLGIIGMALGLFVLLAFLSTRFAFTVPTIALEGRGVFAAAAQSWRLTRGAFWRTFGILLLV 300
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122160.4564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001C8BCD0D9.490e-934.31glycerophosphoryl diester phosphodiesterase membra... [more]
UPI001F4861949.810e-632.69glycerophosphoryl diester phosphodiesterase membra... [more]
UPI001FB263225.610e-530.77glycerophosphoryl diester phosphodiesterase membra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122160contigM-pyrifera_M_contig122160:26..391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.4633327-CDS-M-pyrifera_M_contig122160:25..3911622815741.4633327-CDS-M-pyrifera_M_contig122160:25..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122160 26..391 -
1692277547.7348254-CDS-M-pyrifera_M_contig122160:25..3911692277547.7348254-CDS-M-pyrifera_M_contig122160:25..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122160 26..391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122160.4564.1prot_M-pyrifera_M_contig122160.4564.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122160 26..391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122160.4564.1

>prot_M-pyrifera_M_contig122160.4564.1 ID=prot_M-pyrifera_M_contig122160.4564.1|Name=mRNA_M-pyrifera_M_contig122160.4564.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
VLNNDESKIRGAWSAGWRRFFPMIGMLIIYVLIIGSIVVVGGLITAGIAM
LSKWLGILFGIALYIGIFYLAIRFYYTIPLVTSREHGVFRSFGESWRLSR
GYFWRLLGMMFFVLGATSLLFI
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mRNA from alignment at M-pyrifera_M_contig122160:26..391-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122160.4564.1 ID=mRNA_M-pyrifera_M_contig122160.4564.1|Name=mRNA_M-pyrifera_M_contig122160.4564.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig122160:26..391- (Macrocystis pyrifera P11B4 male)
GTGCTCAATAATGATGAAAGCAAAATTAGAGGTGCGTGGTCTGCAGGTTG
GAGACGCTTCTTCCCCATGATTGGTATGCTTATTATTTACGTGCTCATTA
TCGGTTCAATTGTTGTAGTTGGTGGCTTAATTACGGCTGGAATCGCCATG
CTGAGTAAATGGCTAGGCATTCTCTTTGGAATAGCCCTCTATATCGGGAT
ATTTTACCTCGCCATCCGCTTTTACTACACGATCCCATTGGTTACTAGCC
GTGAACATGGTGTATTCCGATCATTTGGTGAAAGCTGGCGCTTGTCGAGA
GGCTATTTCTGGCGCTTGCTTGGCATGATGTTCTTTGTCCTTGGGGCGAC
CTCCCTATTATTCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122160:26..391-

>mRNA_M-pyrifera_M_contig122160.4564.1 ID=mRNA_M-pyrifera_M_contig122160.4564.1|Name=mRNA_M-pyrifera_M_contig122160.4564.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig122160:26..391- (Macrocystis pyrifera P11B4 male)
GTGCTCAATAATGATGAAAGCAAAATTAGAGGTGCGTGGTCTGCAGGTTG
GAGACGCTTCTTCCCCATGATTGGTATGCTTATTATTTACGTGCTCATTA
TCGGTTCAATTGTTGTAGTTGGTGGCTTAATTACGGCTGGAATCGCCATG
CTGAGTAAATGGCTAGGCATTCTCTTTGGAATAGCCCTCTATATCGGGAT
ATTTTACCTCGCCATCCGCTTTTACTACACGATCCCATTGGTTACTAGCC
GTGAACATGGTGTATTCCGATCATTTGGTGAAAGCTGGCGCTTGTCGAGA
GGCTATTTCTGGCGCTTGCTTGGCATGATGTTCTTTGTCCTTGGGGCGAC
CTCCCTATTATTCATCGTGCTCAATAATGATGAAAGCAAAATTAGAGGTG
CGTGGTCTGCAGGTTGGAGACGCTTCTTCCCCATGATTGGTATGCTTATT
ATTTACGTGCTCATTATCGGTTCAATTGTTGTAGTTGGTGGCTTAATTAC
GGCTGGAATCGCCATGCTGAGTAAATGGCTAGGCATTCTCTTTGGAATAG
CCCTCTATATCGGGATATTTTACCTCGCCATCCGCTTTTACTACACGATC
CCATTGGTTACTAGCCGTGAACATGGTGTATTCCGATCATTTGGTGAAAG
CTGGCGCTTGTCGAGAGGCTATTTCTGGCGCTTGCTTGGCATGATGTTCT
TTGTCCTTGGGGCGACCTCCCTATTATTCATC
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