prot_M-pyrifera_M_contig122004.4530.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig122004.4530.1
Unique Nameprot_M-pyrifera_M_contig122004.4530.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length68
Homology
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A454XZ35_OSTTA (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XZ35_OSTTA)

HSP 1 Score: 85.5 bits (210), Expect = 2.970e-20
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0
Query:   11 SRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTE 57
            S LLP EL+E+CVGSP+WVLMKGE+E+TG LRGFD YVNMVLEDVTE
Sbjct:   13 SALLPSELVERCVGSPLWVLMKGEKEMTGTLRGFDVYVNMVLEDVTE 59          
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A6A6UFI8_9PEZI (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6UFI8_9PEZI)

HSP 1 Score: 85.1 bits (209), Expect = 3.040e-20
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0
Query:   10 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTEMYGIGG 63
            AS+LLPLELI+KCVGS IWV+MKGE+E TG L GFD YVNMVLEDVTE    GG
Sbjct:    2 ASQLLPLELIDKCVGSRIWVIMKGEKEFTGTLLGFDDYVNMVLEDVTEFDFTGG 55          
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: N1J7Z5_BLUG1 (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Blumeria TaxID=34372 RepID=N1J7Z5_BLUG1)

HSP 1 Score: 84.7 bits (208), Expect = 4.560e-20
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 0
Query:   10 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTEMYGIG 62
            AS+LLPLELI+KCVGS IWV+MKG++E TG+L GFD YVNMVLEDVTE+  +G
Sbjct:    2 ASQLLPLELIDKCVGSKIWVVMKGDKEFTGVLLGFDDYVNMVLEDVTEIDYLG 54          
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: W7LXC0_GIBM7 (U6 snRNA-associated Sm-like protein LSm5 n=10 Tax=Fusarium TaxID=5506 RepID=W7LXC0_GIBM7)

HSP 1 Score: 83.6 bits (205), Expect = 7.290e-20
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 0
Query:   10 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTEMY 59
            AS+LLPLELI+KCVGS IWV+MKG++E +G L GFD YVNMVLEDVTE+Y
Sbjct:    2 ASQLLPLELIDKCVGSRIWVIMKGDKEFSGTLVGFDDYVNMVLEDVTELY 51          
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A420IT50_9PEZI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420IT50_9PEZI)

HSP 1 Score: 84.0 bits (206), Expect = 9.700e-20
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0
Query:   10 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTEMYGIGG 63
            AS+LLPLELI+KCVGS IWV+MKG++E +G+L GFD YVNMVLEDVTE+   GG
Sbjct:    2 ASQLLPLELIDKCVGSKIWVVMKGDKEFSGVLLGFDDYVNMVLEDVTEIDYSGG 55          
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: S3C9X0_OPHP1 (U6 snRNA-associated Sm-like protein LSm5 n=6 Tax=Sordariomycetes TaxID=147550 RepID=S3C9X0_OPHP1)

HSP 1 Score: 82.8 bits (203), Expect = 2.300e-19
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0
Query:   10 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTEMYGIGG 63
            A++LLPLELI+KCVGS IWV+MKGERE +G L GFD YVNMVLEDVTE    GG
Sbjct:    2 AAQLLPLELIDKCVGSRIWVVMKGEREFSGTLVGFDDYVNMVLEDVTEFDYTGG 55          
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A8K1CS49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS49_PYTOL)

HSP 1 Score: 82.8 bits (203), Expect = 2.630e-19
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    9 SASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTE 57
            SA RLLPLELI+KC+GS IW++MKG++E  G LRGFD YVNMVL+DVTE
Sbjct:    2 SAGRLLPLELIDKCIGSQIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTE 50          
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.640e-19
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 0
Query:   10 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTE 57
            A RL+PLELI+KC+GS +W++MKG++EL G LRGFD YVNMVLEDVTE
Sbjct:    2 AGRLMPLELIDKCIGSKLWIIMKGDKELVGTLRGFDDYVNMVLEDVTE 49          
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A1Y2EHZ5_9PEZI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Xylariales TaxID=37989 RepID=A0A1Y2EHZ5_9PEZI)

HSP 1 Score: 82.4 bits (202), Expect = 4.160e-19
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query:    8 PSASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTE 57
            P+AS LLPLELI+KCVGS IWV+MKG++E +G L GFD YVNMVLEDVTE
Sbjct:    6 PTASSLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 55          
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A6G1IB61_9PEZI (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Trichodelitschia bisporula TaxID=703511 RepID=A0A6G1IB61_9PEZI)

HSP 1 Score: 82.0 bits (201), Expect = 5.030e-19
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0
Query:   10 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTE 57
            AS+LLPLELIEKCVGS IWV+MKG++E +G L GFD YVNMVLEDVTE
Sbjct:    2 ASQLLPLELIEKCVGSKIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A454XZ35_OSTTA2.970e-2080.85U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=O... [more]
A0A6A6UFI8_9PEZI3.040e-2075.93U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=M... [more]
N1J7Z5_BLUG14.560e-2073.58U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=B... [more]
W7LXC0_GIBM77.290e-2076.00U6 snRNA-associated Sm-like protein LSm5 n=10 Tax=... [more]
A0A420IT50_9PEZI9.700e-2072.22U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=G... [more]
S3C9X0_OPHP12.300e-1974.07U6 snRNA-associated Sm-like protein LSm5 n=6 Tax=S... [more]
A0A8K1CS49_PYTOL2.630e-1973.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835ZDD9_9STRA3.640e-1972.92U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A1Y2EHZ5_9PEZI4.160e-1976.00U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=X... [more]
A0A6G1IB61_9PEZI5.030e-1979.17U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 17..63
e-value: 2.1E-6
score: 37.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 18..59
e-value: 1.2E-13
score: 50.5
NoneNo IPR availableGENE3D2.30.30.100coord: 14..65
e-value: 5.3E-18
score: 66.4
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 10..58
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 13..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122004contigM-pyrifera_M_contig122004:243..446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122004.4530.1mRNA_M-pyrifera_M_contig122004.4530.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig122004 243..446 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig122004.4530.1 ID=prot_M-pyrifera_M_contig122004.4530.1|Name=mRNA_M-pyrifera_M_contig122004.4530.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MASSGPPPSASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNM
VLEDVTEMYGIGGVDGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR033871LSm5
IPR010920LSM_dom_sf